Table 3. Repeat composition of Vallisneria spinulosa compared with other monocot plant genomes.
Genome size | Vallisneria spinulosa 3,595 Mbp | Sorghum bicolor 730 Mbp | Lemna minor 481 Mbp | Oryza sativa 430 Mbp | Brachypodium distachyon 355 Mbp | Spirodela polyrhiza 158 Mbp | |
---|---|---|---|---|---|---|---|
Retroelements (%) | 43.50 | 54.50 | 31.20 | 32.10 | 23.30 | 13.06 | |
LTR | 43.02 | 54.47 | 29.57 | 30.85 | 21.39 | 13.06 | |
Gypsy | 31.60 | 19.00 | 10.59 | 9.06 | 13.46 | 6.06 | |
Copia | 11.42 | 5.18 | 18.79 | 3.32 | 5.13 | 1.72 | |
Gypsy/copia ratio | 2.77 | 3.67 | 0.56 | 2.73 | 2.62 | 3.50 | |
non-LTR | 0.46 | 0.06 | 1.62 | 1.24 | 1.94 | n.a. | |
Transposon (%) | 0.51 | 7.50 | 5.08 | 10.10 | 4.80 | n.a. |
Notes.
Values are represented as percentage of genome.