Table 1. De novo assembly and annotations metrics for the transcriptome of Ascaridia galli.
| Ascaridia galli | |
|---|---|
| Assembled transcripts | 301,681 |
| Assembled Trinity”genes” | 162,400 |
| Assembled bases | 327,057,823 |
| Contig N50 | 2,337 |
| Contig E90N50 | 2,342 |
| Average length | 1084.12 |
| Longest contig | 14,656 |
| Shortest contig | 201 |
| GC% | 42.04 |
| Transcripts with ORF | 119,701 |
| Transcripts with annotation | 30,959 |
| Annotated transcripts with ORF | 17,230 |
| Pfam | 8,786 |
| Signal peptides | 5 |
| Transmembrane domains | 3,901 |
| Ribosomal RNA (RNAMMER) | 10 |
| EggNOG | 9,786 |
| KEGG | 9,919 |
| Gene ontology | 8,877 |
| SwissProt | 9,502 |