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. 2017 Oct 24;13(10):e1005789. doi: 10.1371/journal.pcbi.1005789

Table 1. Final parameter settings for the oligo kernel classifiers for each bNAb.

Epitope bNAb l width
V1/V2 Loop PG9 1 1
PG16 1 0.4
V3 Loop PGT121 6 1.6
10-996 1 2.6
10-1074 1 1.6
CD4bs VRC01 2 3.6
VRC-PG04 6 20

The parameter l denotes the size of the l-mer and the parameter width2) the allowed positional uncertainty of the kernel.