Table 1. Final parameter settings for the oligo kernel classifiers for each bNAb.
Epitope | bNAb | l | width |
---|---|---|---|
V1/V2 Loop | PG9 | 1 | 1 |
PG16 | 1 | 0.4 | |
V3 Loop | PGT121 | 6 | 1.6 |
10-996 | 1 | 2.6 | |
10-1074 | 1 | 1.6 | |
CD4bs | VRC01 | 2 | 3.6 |
VRC-PG04 | 6 | 20 |
The parameter l denotes the size of the l-mer and the parameter width (σ2) the allowed positional uncertainty of the kernel.