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. Author manuscript; available in PMC: 2018 Nov 1.
Published in final edited form as: J Biomed Inform. 2017 May 3;75 Suppl:S54–S61. doi: 10.1016/j.jbi.2017.05.001

Table 5.

The aggregated performance for all PHI on the unseen test set.

Run 1 Run 2 Run 3
P R F1 P R F1 P R F1
Token 0.9484 0.8597 0.9019 0.9455 0.8596 0.9005 0.9463 0.8494 0.8952
Token Binary 0.9721 0.8811 0.9244 0.9696 0.8815 0.9235 0.972 0.8725 0.9196
Entity Strict 0.9162 0.8338 0.8731 0.9118 0.8342 0.8712 0.9164 0.822 0.8666
Entity Relaxed 0.9194 0.8367 0.8761 0.915 0.8371 0.8743 0.9195 0.8248 0.8696
Entity Binary Strict 0.934 0.85 0.89 0.9292 0.8501 0.8879 0.9362 0.8398 0.8854

The challenge’s primary measures are marked in bold.