Table 1.

Summary of read numbers aligned onto the wheat reference genome in the study.

Samples	Total reads	Mapped reads	Uniquely mapped reads	Multiple mapped reads
Control-wheat-R1	57,503,228	38,677,956 (67.3)	32,083,721 (55.8)	6,594,235 (11.5)
Control-wheat-R2	58,077,944	37,182,742 (64.0)	32,331,538 (55.7)	4,851,204 (8.4)
Control-wheat-R3	59,987,522	39,157,955 (65.3)	32,917,113 (54.9)	6,240,842 (10.4)
Treatment-wheat-R1	55,886,834	36,271,171 (64.9)	29,487,722 (52.8)	6,783,449 (12.1)
Treatment-wheat-R2	59,764,690	38,833,790 (65.0)	33,890,672 (56.7)	4,943,118 (8.3)
Treatment-wheat-R3	62,489,824	41,109,281 (65.8)	35,179,867 (56.3)	5,929,414 (9.5)

The number in brackets indicates the percentage of total reads aligned onto the wheat reference genome and/or matched at either unique or multiple genomic locations.