Table 2.
The basic alignment information for RNA-seq data generated from three adipose depots of the fat-tailed Tan sheep.
| Mapping summary | TS1 | TS2 | TS3 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SAT1 | VAT1 | TAT1 | SAT2 | VAT2 | TAT2 | SAT3 | VAT3 | TAT3 | |
| Raw reads | 65,880,104 | 80,602,654 | 61,512,242 | 78,707,478 | 69,633,124 | 74,442,636 | 67,114,874 | 71,803,958 | 78,599,898 |
| Clean reads | 64,178,150 | 76,739,802 | 58,169,446 | 76,268,478 | 66,696,618 | 70,949,286 | 64,979,520 | 68,344,744 | 74,468,172 |
| Clean reads: Q20 | 97.68% | 97.09% | 96.81% | 97.43% | 97.15% | 97.03% | 97.39% | 97.16% | 97.06% |
| Clean reads: Q30 | 94.25% | 93.00% | 92.49% | 93.87% | 93.05% | 92.89% | 93.74% | 93.12% | 92.98% |
| Clean reads: GC content | 50.83% | 54.12% | 53.04% | 51.25% | 51.52% | 54.49% | 53.27% | 54.04% | 53.26% |
| Clean reads: error rate | 0.01% | 0.01% | 0.01% | 0.01% | 0.01% | 0.01% | 0.01% | 0.01% | 0.01% |
| Total mapped reads | 50,796,443 | 56,521,253 | 42,399,979 | 59,273,330 | 51,589,040 | 52,650,369 | 49,932,739 | 50,596,334 | 55,356,714 |
| Multiple mapped reads | 1,791,049 | 2,132,453 | 1,436,691 | 1,913,134 | 1,906,062 | 1,657,038 | 1,624,543 | 2,053,102 | 2,086,288 |
| Unique mapped reads | 49,005,394 | 54,388,800 | 40,963,288 | 57,360,196 | 49,682,978 | 50,993,331 | 48,308,196 | 48,543,232 | 53,270,426 |
| Non-splice reads | 28,450,457 | 32,733,131 | 25,511,843 | 34,017,881 | 29,584,890 | 28,299,573 | 25,897,178 | 28,482,876 | 33,067,759 |
| Splice reads | 20,554,937 | 21,655,669 | 15,451,445 | 23,342,315 | 20,098,088 | 22,693,758 | 22,411,018 | 20,060,356 | 20,202,667 |
| Mapping rate | 79.15% | 73.65% | 72.89% | 77.72% | 77.35% | 74.21% | 76.84% | 74.03% | 74.34% |