Table 3.

Basic statistics of Trinity transcripts using original Inchworm and MapReduce-Inchworm using the mouse RNA-seq data [22]

	original Inchworm	MapReduce-Inchworm
Total trinity genes	55,498	55,047
Total trinity transcripts	80,825	78,719
Percent GC	49.4	49.46
Contig N10	6282	6163
Contig N20	4725	4621
Contig N30	3946	3831
Contig N40	3275	3183
Contig N50	2693	2630
Median contig length	551	558
Average contig	1284.53	1267.98
Total assembled bases	103,822,088	99,814,020

The statistics were calculated using the perl script TrinityStats.pl, included in the original Trinity pipeline