Table 2.
Splice variants of the bread wheat Csl genes
| Ensembl gene ID | Gene name | Predicted amino acids | Spliced exon/introns | Status |
|---|---|---|---|---|
| TRIAE_CS42_6BS_TGACv1_513375_AA1639370.1 | TaCslA1_6BS | 581 | – | Wild type |
| TRIAE_CS42_6BS_TGACv1_513375_AA1639370.2 | 390 | Exon 1 and 2 | Exon skipping | |
| TRIAE_CS42_6BS_TGACv1_513376_AA1639390.2 | TaCslA4_6BS | 528 | – | Wild type |
| TRIAE_CS42_6BS_TGACv1_513376_AA1639390.1 | 393 | Exon 1 and 2 | Exon skipping | |
| TRIAE_CS42_7AS_TGACv1_569190_AA1809650.1 | TaCslA3_7AS | 551 | – | Wild type |
| TRIAE_CS42_7AS_TGACv1_569190_AA1809650.2 | 380 | Exon 7, 8 and 9 | Exon skipping | |
| TRIAE_CS42_7AS_TGACv1_569190_AA1809650.3 | 503 | Exon 9 | Exon skipping | |
| TRIAE_CS42_7DL_TGACv1_602617_AA1962870.2 | TaCslA10_7DL | 515 | – | Wild type |
| TRIAE_CS42_7DL_TGACv1_602617_AA1962870.1 | 555 | Intron 8 | Intron retention | |
| TRIAE_CS42_3DL_TGACv1_249033_AA0835410.2 | TaCslA6_3DL | 524 | – | Wild type |
| TRIAE_CS42_3DL_TGACv1_249033_AA0835410.1 | 572 | Intron 1 | Intron retention | |
| TRIAE_CS42_3B_TGACv1_221079_AA0729630.1 | TaCslA6_3B | 571 | – | Wild type |
| TRIAE_CS42_3B_TGACv1_221079_AA0729630.2 | 538 | Exon 2 | Exon skipping | |
| TRIAE_CS42_5BL_TGACv1_404820_AA1311790.1 | TaCslC10_5BL | 712 | – | Wild type |
| TRIAE_CS42_5BL_TGACv1_404820_AA1311790.2 | 468 | Exon 5 | Alternative 5′ site | |
| TRIAE_CS42_5BL_TGACv1_404820_AA1311790.3 | 504 | Exon 1 | Exon skipping | |
| TRIAE_CS42_5DL_TGACv1_435778_AA1454840.1 | TaCslC10_5DL | 708 | – | Wild type |
| TRIAE_CS42_5DL_TGACv1_435778_AA1454840.2 | 502 | Exon1 | Exon skipping | |
| TRIAE_CS42_5AL_TGACv1_374268_AA1195590.3 | TaCslC10_5AL | 703 | – | Wild type |
| TRIAE_CS42_5AL_TGACv1_374268_AA1195590.2 | 496 | Exon 5 | Alternative 5′ site | |
| TRIAE_CS42_5AL_TGACv1_374268_AA1195590.1 | 501 | Exon 5 | Exon skipping | |
| TRIAE_CS42_3DL_TGACv1_251593_AA0882850.1 | TaCslC1_3DL | 704 | – | Wild type |
| TRIAE_CS42_3DL_TGACv1_251593_AA0882850.2 | 493 | Exon 5 | Exon skipping | |
| TRIAE_CS42_3DL_TGACv1_251593_AA0882850.3 | 679 | Exon 1 | Alternative 3′ site | |
| TRIAE_CS42_3AL_TGACv1_197197_AA0665370.1 | TaCslC1_3AL | 704 | – | Wild type |
| TRIAE_CS42_3AL_TGACv1_197197_AA0665370.2 | 560 | Exon 5 | Alternative 3′ site | |
| TRIAE_CS42_3AL_TGACv1_197197_AA0665370.3 | 679 | Exon 5 | Alternative 5′ site | |
| TRIAE_CS42_6AL_TGACv1_471004_AA1500600.1 | TaCslE2_6AL | 667 | – | Wild type |
| TRIAE_CS42_6AL_TGACv1_471004_AA1500600.2 | 737 | Intron 8 | Intron retention | |
| TRIAE_CS42_6AL_TGACv1_471004_AA1500600.3 | 635 | Exon 4 | Alternative 5′ site | |
| TRIAE_CS42_5DL_TGACv1_433536_AA1415830.1 | TaCslE1_5DL | 728 | – | Wild type |
| TRIAE_CS42_5DL_TGACv1_433536_AA1415830.2 | 684 | Exon 4 | Exon skipping | |
| TRIAE_CS42_5BL_TGACv1_406235_AA1342600.1 | TaCslE1_5BL | 734 | – | Wild type |
| TRIAE_CS42_5BL_TGACv1_406235_AA1342600.2 | 728 | Exon 1 | Exon skipping | |
| TRIAE_CS42_2DS_TGACv1_177641_AA0581710.1 | TaCslF3_2DS | 847 | – | Wild type |
| TRIAE_CS42_2DS_TGACv1_177641_AA0581710.2 | 735 | Exon 2 | Alternative 3′ site | |
| TRIAE_CS42_2DS_TGACv1_179076_AA0604160.1 | TaCslF4_2DS | 783 | – | Wild type |
| TRIAE_CS42_2DS_TGACv1_179076_AA0604160.2 | 700 | Exon 1 | Exon skipping | |
| TRIAE_CS42_2BS_TGACv1_147667_AA0486240.1 | TaCslF9_2BS | 877 | – | Wild type |
| TRIAE_CS42_2BS_TGACv1_147667_AA0486240.2 | 796 | Exon 1 | Exon skipping | |
| TRIAE_CS42_5BL_TGACv1_409916_AA1366600.1 | TaCslF7_5BL | 745 | – | Wild type |
| TRIAE_CS42_5BL_TGACv1_409916_AA1366600.2 | 815 | Intron 2 | Intron retention | |
| TRIAE_CS42_5AL_TGACv1_374191_AA1193100.1 | TaCslF7_5AL | 792 | – | Wild type |
| TRIAE_CS42_5AL_TGACv1_374191_AA1193100.2 | 807 | Intron 1 | Intron retention | |
| TRIAE_CS42_2AL_TGACv1_094351_AA0296300.1 | TaCslH1_2AL | 737 | – | Wild type |
| TRIAE_CS42_2AL_TGACv1_094351_AA0296300.2 | 660 | Exon 9 | Exon skipping | |
| TRIAE_CS42_2AL_TGACv1_094351_AA0296300.3 | 480 | Exon 6, 7, 8 and 9 | Exon skipping | |
| TRIAE_CS42_3AS_TGACv1_210908_AA0681280.1 | TaCslJ1_3AS | 738 | – | Wild type |
| TRIAE_CS42_3AS_TGACv1_210908_AA0681280.2 | 766 | Intron 4 | Intron retention | |
| TRIAE_CS42_3DS_TGACv1_272756_AA0924850.2 | TaCslJ2_3DS | 609 | – | Wild type |
| TRIAE_CS42_3DS_TGACv1_272756_AA0924850.1 | 734 | Intron 1 | Intron retention |