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. 2017 Oct 31;7:459. doi: 10.3389/fcimb.2017.00459

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Copyright © 2017 Nourdin-Galindo, Sánchez, Molina, Espinoza-Rojas, Oliver, Ruiz, Vargas-Chacoff, Cárcamo, Figueroa, Mancilla, Maracaja-Coutinho and Yañez.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Phylogenetic and phylogenomics relationships. (A) Phylogenetic relationship of Piscirickettsia salmonis strains, according to the housekeeping genes shared by all complete genomes (i.e., dnaK, groEL, recA, gyrA, gyrB, rpoB, and ftsZ). (B) Phylogenomics tree generated based on a total of 1,732 protein sequences forming part of the P. salmonis core-genome. Trees were obtained through the TreeFinder software, using the maximum likelihood method and a bootstrap with 5,000 iterations. Color shading indicates to genogroup to which each stain belongs (blue: LF genogroup; red: EM genogroup). More information on strain characteristics is provided in Table 1.