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. 2017 Nov 2;5:e3951. doi: 10.7717/peerj.3951

Table 1. Main signals observed in the GWAS of skin pigmentation (M-values).

We report the beta, SE and P-values obtained with the model using the standardized and unstandardized residuals.

SNP CHR POS NEA/EA Gene Frq EA INFO Betaa SEa Pa Betab SEb Pb
rs2003589 2 217527465 T/C IGFBP2 0.063 0.843 0.885 0.177 9.54E–07 2.464 0.494 1.05E–06
rs853807 5 67752638 C/T 0.485 0.956 −0.347 0.077 8.45E–06 −0.961 0.213 9.75E–06
rs57836066 6 71304950 T/G RP11-134K13.4 0.086 0.979 −0.661 0.137 2.17E–06 −1.838 0.382 2.40E–06
rs2373391 7 88449300 T/A ZNF804B 0.681 0.987 −0.384 0.083 4.98E–06 −1.076 0.232 5.09E–06
rs7945369 11 103425586 T/C 0.537 0.968 −0.405 0.079 5.26E–07 −1.159 0.224 3.97E–07

Notes.

a

Beta estimate using standardized residuals.

b

Beta estimate using unstandardized residuals.