Table 1.
DNA region | No. of sequences in matrix | No. of new sequences in matrix | No. of published sequences in matrix | Alignment length | Unaligned sequence length (x‒ ± s.d.) (bp) | Maximum sequence length (bp) | Minimum sequence length (bp) |
---|---|---|---|---|---|---|---|
ITS [3’-18S–ITS1–5.8S–ITS2–5’-26S] | 1079 | 294 | 785 | 1137 | 687 ± 154 | 1008 | 205 |
ITS 1 | 272 | 211 ± 15 | 221 | 16 | |||
5.8S | 165 | 16 ± 22 | 165 | 1 | |||
ITS 2 | 266 | 209 ± 18 | 219 | 27 | |||
ETS | 352 | 328 | 24 | 1925 | 548 ± 57 | 864 | 265 |
atpF–atpH | 356 | 355 | 1 | 7391 | 599 ± 79 | 673 | 309 |
matK | 928 | 367 | 561 | 1555 | 920 ± 295 | 1542 | 400 |
matK (reduced)* | 368 | 367 | 1 | 966 | 774 ± 98 | 957 | 461 |
psbA–rps19–trnH | 380 | 379 | 1 | 7592 | 583 ± 67 | 680 | 346 |
psbK–psbI | 392 | 391 | 1 | 5863 | 362 ± 107 | 471 | 150 |
trnL–trnF | 474 | 311 | 163 | 14814 | 785 ± 118 | 1026 | 310 |
trnL–trnF (reduced)** | 341 | 311 | 30 | 1418 | 816 ± 78 | 1026 | 498 |
1 The aligned atpF–atpH intergenic spacer is 521 bp; the entire region includes flanking portions of the atpF and atpH genes.
2 The psbA–trnH intergenic spacer is 142 bp, the rsps19 gene is 219 bp, and the rps19–trnH intergenic spacer is 206 bp; the entire region includes flanking portions of the psbA and trnH genes.
3 The aligned psbK–psbI intergenic spacer is 519 bp; the entire region includes flanking portions of the psbK and psbI genes.
4 The aligned trnL intron is 671 bp, the aligned 3'-trnL exon is 65 bp and the aligned trnL–trnF intergenic spacer is 668 bp; the entire region includes flanking portions of the 5'-trnL exon and the trnF gene.
* including only newly generated data and the outgroup
** including newly generated data and a small subset of previously published data, including the outgroup