| Antibodies |
| anti-mouse CD16/32 |
BioLegend |
Cat#101301 |
| anti-mouse CD326, G8.8 |
BioLegend |
Cat#118207 |
| anti-mouse F480, clone T45-2342 |
BD Biosciences |
Cat#565410 |
| TRITC Ulex europaeus, UEA-I, lectin |
Sigma |
Cat#L4889 |
| FITC conjugated UEA-I lectin |
EY laboratories |
Cat#F-2201-2 |
| Muc 2 antibody, H-300 |
Santa Cruz |
Cat#sc-15334 |
| Secondary Antibody, Alexa Fluor 647 |
ThermoFisher |
Cat#A31573
|
| Bacterial and Virus Strains |
| Clostridium butyricum |
ATCC |
ATCC 19398 |
| Clostridium ramosum |
ATCC |
ATCC 25582 |
| Clostridium scindens |
ATCC |
ATCC 35704 |
| Clostridium tyrobutyricum |
ATCC |
ATCC 25755 |
| Coprococcus comes |
ATCC |
ATCC 27758 |
| Lachnospiraceae bacterium |
ATCC |
ATCC BAA2281 |
| Ruminococcus gnavus |
ATCC |
ATCC 29148 |
| Ruminococcus torques |
ATCC |
ATCC 27756 |
| Bacteroides thetaiotaomicron |
ATCC |
ATCC 29148 |
| Akkermansia muciniphila |
ATCC |
ATCC BAA835 |
| Anaerotruncus colihominis |
DSMZ |
DSM 17241 |
| Blautia hansenii |
DSMZ |
DSM 20583 |
| Blautia hydrogenotrophica |
DSMZ |
DSM 10507 |
| Blautia producta |
DSMZ |
DSM 2950 |
| Catenibacterium mitsuokai |
DSMZ |
DSM 15897 |
| Clostridium aldenense |
DSMZ |
DSM 19262 |
| Clostridium asparagiforme |
DSMZ |
DSM 15981 |
| Clostridium bolteae |
DSMZ |
DSM 15670 |
| Clostridium hathewayi |
DSMZ |
DSM 13479 |
| Clostridium hiranonis |
DSMZ |
DSM 13275 |
| Clostridium lentocellum |
DSMZ |
DSM 5427 |
| Clostridium methylpentosum |
DSMZ |
DSM 5476 |
| Clostridium spiroforme |
DSMZ |
DSM 1552 |
| Clostridium symbiosum |
DSMZ |
DSM 934 |
| Dorea formicigenerans |
DSMZ |
DSM 3992 |
| Eubacterium biforme |
DSMZ |
DSM 3989 |
| Eubacterium dolichum |
DSMZ |
DSM 3991 |
| Holdemania filiformis |
DSMZ |
DSM 12042 |
| Marvinbryantia formatexigens |
DSMZ |
DSM 14469 |
| Peptostreptococcus anaerobius |
DSMZ |
DSM 2949 |
| Peptostreptococcus russellii |
DSMZ |
DSM 23041 |
| Peptostreptococcus stomatis |
DSMZ |
DSM 17678 |
| Ruminococcus obeum |
DSMZ |
DSM 25238 |
| Chemicals, Peptides, and Recombinant Proteins |
| Dextran Sulfate Sodium salt, colitis grade |
MP Biomedicals |
Cat#02160110 |
| rmIL-4 |
Peprotech |
Cat#214-14 |
| rmM-CSF |
Peprotech |
Cat#315-02 |
| trans-indole-3-acrylic acid, IA |
Sigma |
Cat#I3807 |
| indole 3-propionic acid, IPA |
Sigma |
Cat#57400 |
| 3-(4-hydroxyphenyl)propionic acid, HPPA |
Alfa Aesar |
Cat#A14567 |
| porcine mucin |
Sigma |
Cat#M2378 |
| 1% vitamin K1-hemin solution |
Becton Dickinson |
Cat#212354 |
| 1% vitamin supplement |
ATCC |
Cat#MD-VS |
| 1% trace mineral supplement |
ATCC |
Cat#MD-TMS |
| Zombie NIR |
BioLegend |
Cat#423105 |
| Permeabilization buffer |
eBioscience |
Cat#00-8333-56 |
| Fixation/Permeabilization concentrate |
eBioscience |
Cat#00-5123-43 |
|
tert-Butylhydroquinone, tBHQ |
Sigma |
Cat#112941 |
| Critical Commercial Assays |
| Mouse Inflammation Cytokine Bead Array |
BD biosciences |
Cat#552364 |
| SuperScript III reverse transcriptase kit |
Invitrogen |
Cat#18080051 |
| TaqMan Fast Advanced Master Mix |
Invitrogen |
Cat#4444557 |
| Human Inflammation Cytokine Bead Array |
BD biosciences |
Cat#551811 |
| Deposited Data |
| Human PBMCs RNA seq data set |
GEO database |
Accession#GSE98884
|
| Experimental Models: Cell Lines |
| RAW264.7 |
ATCC |
Cat#TIB-71 |
| Oligonucleotides |
| See Table S2
|
N/A |
N/A |
| Software and Algorithms |
| Bowtie 2 |
Langmead and Salzberg, 2012 |
http://bowtie-bio.sourceforge.net/bowtie2/index.shtml |
| BLAT |
Kent, 2002 |
http://genome.ucsc.edu/cgi-bin/hgBlat |
| Other |
| Qiagen RNeasy Plus Mini Kit |
Qiagen |
74136 |
