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. 2017 Oct 25;13(10):e1005814. doi: 10.1371/journal.pcbi.1005814

Table 3. Consistency of gene-electrophysiological property correlations between NeuroExpresso/NeuroElectro discovery and AIBS validation datasets.

Overall AIBS consistency indicates overall Spearman rank correlation between the full set of gene-electrophysiological correlations calculated in both the discovery and validation datasets, as shown in Fig 2B. P-values based on 1000 random reshuffles of cell type labels in the AIBS validation dataset. Discovered genes, padj < 0.05 reflects count of genes significantly correlated with each ephys property with in discovery dataset (only includes genes that are also present in AIBS scRNAseq dataset). AIBS consistency, |rs|> 0.3 reflects count and percentage of discovered genes that further show a consistent relationship in the AIBS validation dataset. P-value also based on 1000 shuffled samples of cell type labels in the validation dataset.

Ephys Property Overall AIBS consistency Discovered genes;
padj < 0.05
AIBS consistency;
|rs| > 0.3
Spearman corr. p-value count count % p-value
AHPamp 0.45 0.009 285 204 72 0.005
APamp 0.404 <0.001 169 119 70 0.006
APhw 0.04 0.323 4 3 75 0.056
APthr -0.146 0.877 0 --- --- ---
Cm 0.384 0.037 80 55 69 0.015
FRmax 0.209 0.074 21 7 33 0.159
Rheo -0.049 0.649 15 5 33 0.162
Rin 0.346 0.004 144 68 47 0.029
SFA 0.298 0.01 2 1 50 0.277
Tau -0.106 0.713 6 5 83 0.007
Vrest 0.332 0.029 279 148 53 0.025