Table 1.
Summary of miRNA sequencing, cleaning, and mapping.
| Sample | Number of Reads | ||||
|---|---|---|---|---|---|
|
| |||||
| Sequenced | Cleaned Reads | Mapped to Genome | Mapped to Reference miRNAs | Mapped to Putative Novel miRNAs | |
| All Samples | 57,432,813 | 12,895,405 | 7,303,656 | 3,348,144 | 57,254 |
| Mature Oocytes | |||||
| Diapause 1 | 1,964,986 | 530,966 | 265,757 | 78,529 | 2,401 |
| Diapause 2 | 2,470,716 | 1,008,763 | 472,872 | 88,760 | 14,497 |
| Diapause 3 | 2,943,828 | 704,207 | 355,739 | 113,985 | 4,624 |
| Non-diapause 1 | 2,360,151 | 818,099 | 379,917 | 48,049 | 7,710 |
| Non-diapause 2 | 2,738,026 | 1,815,875 | 868,614 | 84,265 | 14,907 |
| Non-diapause 3 | 2,387,982 | 1,529,625 | 752,327 | 99,268 | 13,259 |
| Pharate Larvae | |||||
| Diapause 1 | 4,374,433 | 1,131,877 | 786,366 | 554,405 | 1,303 |
| Diapause 2 | 5,241,029 | 895,362 | 579,820 | 391,158 | 1,066 |
| Diapause 3 | 5,023,940 | 948,284 | 657,767 | 490,837 | 1,333 |
| Diapause 4 | 6,195,237 | 804,382 | 546,724 | 387,633 | 1,204 |
| Non-diapause 1 | 5,413,799 | 599,212 | 379,394 | 249,619 | 569 |
| Non-diapause 2 | 4,870,514 | 789,399 | 484,299 | 283,740 | 585 |
| Non-diapause 3 | 4,949,601 | 650,623 | 395,246 | 248,802 | 614 |
| Non-diapause 4 | 6,498,571 | 668,731 | 378,814 | 229,094 | 568 |