Table 4.
Genomic coordinates (chromosome and start- and stop-position) of the 32 windows with d i higher than 10, the corresponding population (in brackets, other populations for which the window was significant) and their candidate genes
| BTA | Start position | End position | d i | Population (other populations) | Candidate genes | Associated trait | References |
|---|---|---|---|---|---|---|---|
| 4 | 53,358,285 | 55,358,285 | 13.424 | ER/EV | |||
| 4 | 78,602,192 | 80,602,192 | 10.036 | ER/EV | INHBA | Feed intake | [71] |
| 5 | 16,275,624 | 18,275,624 | 10.760 | SF (BV, OB, ER/EV) | KITLG | [80] | |
| 5 | 46,225,174 | 48,225,174 | 11.852 | RH (HO, SF, ER/EV) | |||
| 5 | 46,225,174 | 48,225,174 | 11.511 | HO (RH, SF, ER/EV) | |||
| 5 | 55,558,224 | 57,558,224 | 13.108 | SI (RH, SF) | STAT6 | Growth efficiency, carcass traits | [81] |
| 5 | 60,520,962 | 62,520,962 | 12.197 | SI | |||
| 5 | 75,148,807 | 77,148,807 | 10.435 | SI (BV, BS) | SYT10 | Longevity | [82] |
| 5 | 76,432,958 | 78,432,958 | 10.735 | BS (BV, OB) | SYT10 | Longevity | [82] |
| 6 | 32,407,621 | 34,407,621 | 11.691 | BV (BS) | |||
| 6 | 69,255,003 | 71,255,003 | 13.069 | SI (BV, BS, HO, SF) | KIT | White spotting | [80] |
| 6 | 77,416,656 | 79,416,656 | 12.928 | HO (BS, BV, RH, SF, BS, BV) | |||
| 6 | 77,416,656 | 79,416,656 | 11.932 | RH (BS, BV, HO, SF,) | |||
| 11 | 65,512,895 | 67,512,895 | 12.856 | OB | PROKR1 | Fertility | [48] |
| 11 | 67,608,705 | 69,608,705 | 17.985 | OB (BV, SF, SI, ER/EV) | CAPN14, CAPN13, LBH, LCLAT1, GFPT1, EHD3, GMCL1, PCBP1 | Fertility, meat quality | [48, 75, 76] |
| 11 | 67,608,705 | 69,608,705 | 11.660 | SI (BV, OB, SF, ER/EV) | |||
| 14 | 23,392,111 | 25,392,111 | 18.647 | RH (BS, BV, OB, HO, SF, SI, ER/EV) | PLAG1, CHCHD7, LYN, TGS1 | Stature, fertility | [69, 70] |
| 14 | 23,392,111 | 25,392,111 | 15.509 | SF (BS, BV, OB, HO, RH, SI, ER/EV) | |||
| 14 | 23,392,111 | 25,392,111 | 15.050 | HO (BS, BV, OB, RH, SF, SI, ER/EV) | |||
| 14 | 23,392,111 | 25,392,111 | 10.466 | OB (BS, BV, HO, RH, SF, SI, ER/EV) | |||
| 16 | 24,736,714 | 26,736,714 | 15.161 | BV (BS, OB, RH, SF, SI) | HLX | Feed efficiency | [83] |
| 16 | 24,736,714 | 26,736,714 | 14.335 | BS (BV, OB, RH, SF, SI) | |||
| 16 | 26,450,435 | 28,450,435 | 10.846 | BS (BV, OB) | TLR5, CAPN8, CAPN2 | Disease resistance, meat quality | [75, 84–86] |
| 18 | 13,233,845 | 15,233,845 | 25.720 | HO (OB, RH, SF, SI) | MC1R, SLC7A5, CDH15, GALNS, FANCA | Coat color | [31–33, 87] |
| 18 | 13,233,845 | 15,233,845 | 24.272 | RH (OB, HO, SF, SI) | |||
| 18 | 13,233,845 | 15,233,845 | 10.451 | SF (OB, HO, RH, SI) | |||
| 18 | 14,373,569 | 16,373,569 | 13.715 | RH (HO, SF) | FANCA | [87] | |
| 20 | 29,194,786 | 31,194,786 | 14.835 | HO (RH) | MRPS30, FGF10 | Milk yield. Protein percentage | [88, 89] |
| 20 | 43,561,002 | 45,561,002 | 10.593 | HO (RH) | |||
| 20 | 46,566,649 | 48,566,649 | 12.743 | HO (RH, SF, SI) | CDH9 | Clinical mastitis | [90] |
| 20 | 46,566,649 | 48,566,649 | 10.759 | RH (HO, SF, SI) | CDH9 | Clinical mastitis | [90] |
| 26 | 21,528,510 | 23,528,510 | 13.360 | ER/EV (OB) | FGF8, SCD | Carcass quality, fertility, fatty acid composition | [72–74] |