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. 2017 Oct;9(Suppl 13):S1383–S1390. doi: 10.21037/jtd.2017.06.97

Table 1. Patients characteristics and NGS results.

Patient Sex Age Reads Mean read length (bp) Number of mapped reads % reads on target (%) Average reads per amplicon Uniformity of amplicon coverage (%) NRAS (allelic frequency) BRAF (allelic frequency) EGFR (allelic frequency) KRAS (allelic frequency)
1 M 76 325,098 127 324,684 97.31 7,523 100.00 WT WT WT WT
2 F 77 223,871 130 223,209 97.71 5,187 100.00 WT WT WT WT
3 M 68 288,543 127 287,410 97.60 6,679 100.00 WT WT WT WT
4 F 74 26,017 125 25,666 96.70 590.9 97.62 G12S (1.00%) WT WT WT
5 F 36 163,218 128 162,752 98.06 3,800 97.62 WT WT WT G12D (1.50%)
6 F 50 146,656 127 145,906 97.25 3,378 100.00 WT V600A (0.20%) WT WT
7 M 70 173,021 127 172,314 97.55 4,002 97.62 G13D (0.34%) WT WT Q61H (0.20%)
8 M 64 151,445 127 150,370 97.03 3,474 97.62 WT WT WT G12C (1.30%)
9 M 61 75,353 127 74,972 97.68 1,744 97.62 WT WT WT WT
10 M 45 190,620 126 189,708 97.49 4,403 100.00 WT WT H773_V774insH (37.0%) WT
11 M 48 103,023 128 102,573 97.79 2,388 97.62 WT WT WT G12C (0.60%)
12 F 61 163,363 128 162,841 97.75 3,790 97.62 WT WT WT WT
13 F 57 130,596 128 130,250 97.72 3,031 97.62 WT WT WT WT
14 F 51 155,551 128 155,018 97.40 3,595 97.62 WT WT WT WT
15 M 62 60,927 128 60,611 97.77 1,411 97.62 WT WT V769_D770insASV (12.30%) WT
16 F 87 67,571 128 67,404 97.85 1,570 97.62 WT WT WT WT
17 F 77 181,295 129 180,633 98.06 4,217 95.24 WT WT WT WT
18 M 75 104,653 127 104,925 97.79 2,429 97.62 WT WT WT WT
19 M 58 262,771 130 261,202 97.94 6,091 97.62 WT WT WT WT
20 F 38 248,897 128 248,287 97.68 5,775 97.62 WT WT WT WT
21 F 51 169,989 128 169,581 97.44 9,734 97.62 WT WT WT WT
22 M 64 36,774 128 36,693 97.84 854.7 97.62 WT WT WT WT
23 M 74 195,245 128 194,624 97.50 4,518 100.00 WT WT L858R (3.20%) WT
24 F 54 82,480 128 82,303 97.80 1,916 97.62 WT WT WT WT
25 M 84 12,499 127 12,439 97.79 289.6 97.62 WT WT WT WT
26 F 59 71,556 129 71,360 97.54 1,657 97.62 WT WT WT G12D (1.30%)
27 M 68 62,909 128 62,723 97.61 1,458 97.62 WT WT WT WT
28 M 56 51,993 128 51,453 97.44 1,194 100.00 WT WT WT WT
29 M 89 21,306 127 21,126 97.12 488.5 97.62 WT WT WT G12D
30 M 53 76 60 66 39.39 0.69 91.45 Failed Failed Failed Failed
31 F 67 49,539 129 49,435 97.50 1,148 97.62 WT G469A (5.00%) WT WT
32 M 62 113,202 130 112,930 98.01 2,635 97.62 WT WT WT G12C (5.63%)
33 M 70 72,936 129 72,752 97.77 1,694 97.62 WT WT WT WT
34 F 71 133,127 129 132,803 97.93 3,096 97.62 WT WT WT WT
35 F 75 78,508 128 78,340 97.55 1,820 97.62 WT WT WT WT
36 M 80 175,862 130 175,177 97.66 4,073 97.62 WT WT WT WT
37 M 66 118,804 129 118,575 97.87 2,763 97.62 WT WT WT WT
38 F 71 139,472 129 139,008 97.23 3,218 100.00 WT WT WT WT
39 M 67 111,500 128 110,909 97.27 2,571 97.62 WT WT WT WT
40 M 64 348,181 135 347,148 97.91 8,093 97.62 WT WT WT G13S (0.20%)
41 M 80 131,590 129 131,257 97.98 3,062 97.62 WT WT WT WT
42 M 80 141,018 129 140,564 98.15 3,285 97.62 Q61P (0.14%) WT WT WT
43 F 76 72,635 128 72,364 97.77 1,685 97.62 WT WT WT G13D (0.30%)
44 M 42 152,707 127 152,031 97.58 3,532 97.62 A59C (0.20%) WT WT WT
45 M 66 74,945 127 74,630 97.64 1,735 97.62 WT WT WT WT
46 F 57 50,945 128 50,607 97.58 1,176 97.62 WT WT WT WT
47 M 67 84,001 130 83,802 97.69 1,949 97.62 WT WT WT WT
48 M 69 133,275 132 132,908 97.57 3,087 97.62 WT WT WT G12S (6.40%)
49 M 65 92,859 126 91,962 96.90 2,122 97.62 WT WT WT G12C (3.30%)
50 M 77 47,845 130 47,653 97.32 1,104 97.62 WT WT WT Q61H (4.50%)
51 M 82 23,283 129 23,118 97.44 5,363 97.62 WT WT WT WT
52 F 77 31,713 129 31,599 97.86 9,363 97.62 WT WT WT WT
53 M 84 121,037 129 120,379 97.44 2,793 97.62 WT WT WT G13S (0.20%)
54 F 73 73,937 129 73,230 97.42 1,699 97.62 WT WT WT WT
55 M 66 136,734 131 136,185 97.37 3,157 97.62 WT WT WT WT
56 M 69 102,126 130 101,718 97.30 2,356 97.62 WT WT WT WT
57 M 65 103,211 131 102,957 97.48 2,390 97.62 WT WT WT WT
58 M 65 73,517 129 73,310 97.32 1,699 97.62 WT WT WT WT
59 M 81 163,403 130 162,818 97.33 3,773 97.62 WT WT WT WT
60 M 68 182,161 130 181,087 97.19 4,190 97.62 WT WT WT WT
61 F 54 64,662 127 63,955 97.52 1,485 97.62 WT WT WT WT
62 F 64 119,320 130 118,669 97.21 2,747 97.62 WT WT WT A59V (0.20%)
63 F 67 103,023 128 102,573 97.79 2,388 97.62 WT WT ELREA (5.40%) WT
64 F 61 173,021 127 172,314 97.55 4,002 97.62 WT WT ELREA (0.70%) WT

Patients characteristics, SiRe® next generation sequencing (NGS) panel run metric parameters (reads, mean read length in base pair, number of mapped reads, percentage of read on target, average reads per amplicon, uniformity of amplicon coverage) and genes mutational status with relative mutated allele frequency are reported for each sample.