Table 1. Patients characteristics and NGS results.
Patient | Sex | Age | Reads | Mean read length (bp) | Number of mapped reads | % reads on target (%) | Average reads per amplicon | Uniformity of amplicon coverage (%) | NRAS (allelic frequency) | BRAF (allelic frequency) | EGFR (allelic frequency) | KRAS (allelic frequency) |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | M | 76 | 325,098 | 127 | 324,684 | 97.31 | 7,523 | 100.00 | WT | WT | WT | WT |
2 | F | 77 | 223,871 | 130 | 223,209 | 97.71 | 5,187 | 100.00 | WT | WT | WT | WT |
3 | M | 68 | 288,543 | 127 | 287,410 | 97.60 | 6,679 | 100.00 | WT | WT | WT | WT |
4 | F | 74 | 26,017 | 125 | 25,666 | 96.70 | 590.9 | 97.62 | G12S (1.00%) | WT | WT | WT |
5 | F | 36 | 163,218 | 128 | 162,752 | 98.06 | 3,800 | 97.62 | WT | WT | WT | G12D (1.50%) |
6 | F | 50 | 146,656 | 127 | 145,906 | 97.25 | 3,378 | 100.00 | WT | V600A (0.20%) | WT | WT |
7 | M | 70 | 173,021 | 127 | 172,314 | 97.55 | 4,002 | 97.62 | G13D (0.34%) | WT | WT | Q61H (0.20%) |
8 | M | 64 | 151,445 | 127 | 150,370 | 97.03 | 3,474 | 97.62 | WT | WT | WT | G12C (1.30%) |
9 | M | 61 | 75,353 | 127 | 74,972 | 97.68 | 1,744 | 97.62 | WT | WT | WT | WT |
10 | M | 45 | 190,620 | 126 | 189,708 | 97.49 | 4,403 | 100.00 | WT | WT | H773_V774insH (37.0%) | WT |
11 | M | 48 | 103,023 | 128 | 102,573 | 97.79 | 2,388 | 97.62 | WT | WT | WT | G12C (0.60%) |
12 | F | 61 | 163,363 | 128 | 162,841 | 97.75 | 3,790 | 97.62 | WT | WT | WT | WT |
13 | F | 57 | 130,596 | 128 | 130,250 | 97.72 | 3,031 | 97.62 | WT | WT | WT | WT |
14 | F | 51 | 155,551 | 128 | 155,018 | 97.40 | 3,595 | 97.62 | WT | WT | WT | WT |
15 | M | 62 | 60,927 | 128 | 60,611 | 97.77 | 1,411 | 97.62 | WT | WT | V769_D770insASV (12.30%) | WT |
16 | F | 87 | 67,571 | 128 | 67,404 | 97.85 | 1,570 | 97.62 | WT | WT | WT | WT |
17 | F | 77 | 181,295 | 129 | 180,633 | 98.06 | 4,217 | 95.24 | WT | WT | WT | WT |
18 | M | 75 | 104,653 | 127 | 104,925 | 97.79 | 2,429 | 97.62 | WT | WT | WT | WT |
19 | M | 58 | 262,771 | 130 | 261,202 | 97.94 | 6,091 | 97.62 | WT | WT | WT | WT |
20 | F | 38 | 248,897 | 128 | 248,287 | 97.68 | 5,775 | 97.62 | WT | WT | WT | WT |
21 | F | 51 | 169,989 | 128 | 169,581 | 97.44 | 9,734 | 97.62 | WT | WT | WT | WT |
22 | M | 64 | 36,774 | 128 | 36,693 | 97.84 | 854.7 | 97.62 | WT | WT | WT | WT |
23 | M | 74 | 195,245 | 128 | 194,624 | 97.50 | 4,518 | 100.00 | WT | WT | L858R (3.20%) | WT |
24 | F | 54 | 82,480 | 128 | 82,303 | 97.80 | 1,916 | 97.62 | WT | WT | WT | WT |
25 | M | 84 | 12,499 | 127 | 12,439 | 97.79 | 289.6 | 97.62 | WT | WT | WT | WT |
26 | F | 59 | 71,556 | 129 | 71,360 | 97.54 | 1,657 | 97.62 | WT | WT | WT | G12D (1.30%) |
27 | M | 68 | 62,909 | 128 | 62,723 | 97.61 | 1,458 | 97.62 | WT | WT | WT | WT |
28 | M | 56 | 51,993 | 128 | 51,453 | 97.44 | 1,194 | 100.00 | WT | WT | WT | WT |
29 | M | 89 | 21,306 | 127 | 21,126 | 97.12 | 488.5 | 97.62 | WT | WT | WT | G12D |
30 | M | 53 | 76 | 60 | 66 | 39.39 | 0.69 | 91.45 | Failed | Failed | Failed | Failed |
31 | F | 67 | 49,539 | 129 | 49,435 | 97.50 | 1,148 | 97.62 | WT | G469A (5.00%) | WT | WT |
32 | M | 62 | 113,202 | 130 | 112,930 | 98.01 | 2,635 | 97.62 | WT | WT | WT | G12C (5.63%) |
33 | M | 70 | 72,936 | 129 | 72,752 | 97.77 | 1,694 | 97.62 | WT | WT | WT | WT |
34 | F | 71 | 133,127 | 129 | 132,803 | 97.93 | 3,096 | 97.62 | WT | WT | WT | WT |
35 | F | 75 | 78,508 | 128 | 78,340 | 97.55 | 1,820 | 97.62 | WT | WT | WT | WT |
36 | M | 80 | 175,862 | 130 | 175,177 | 97.66 | 4,073 | 97.62 | WT | WT | WT | WT |
37 | M | 66 | 118,804 | 129 | 118,575 | 97.87 | 2,763 | 97.62 | WT | WT | WT | WT |
38 | F | 71 | 139,472 | 129 | 139,008 | 97.23 | 3,218 | 100.00 | WT | WT | WT | WT |
39 | M | 67 | 111,500 | 128 | 110,909 | 97.27 | 2,571 | 97.62 | WT | WT | WT | WT |
40 | M | 64 | 348,181 | 135 | 347,148 | 97.91 | 8,093 | 97.62 | WT | WT | WT | G13S (0.20%) |
41 | M | 80 | 131,590 | 129 | 131,257 | 97.98 | 3,062 | 97.62 | WT | WT | WT | WT |
42 | M | 80 | 141,018 | 129 | 140,564 | 98.15 | 3,285 | 97.62 | Q61P (0.14%) | WT | WT | WT |
43 | F | 76 | 72,635 | 128 | 72,364 | 97.77 | 1,685 | 97.62 | WT | WT | WT | G13D (0.30%) |
44 | M | 42 | 152,707 | 127 | 152,031 | 97.58 | 3,532 | 97.62 | A59C (0.20%) | WT | WT | WT |
45 | M | 66 | 74,945 | 127 | 74,630 | 97.64 | 1,735 | 97.62 | WT | WT | WT | WT |
46 | F | 57 | 50,945 | 128 | 50,607 | 97.58 | 1,176 | 97.62 | WT | WT | WT | WT |
47 | M | 67 | 84,001 | 130 | 83,802 | 97.69 | 1,949 | 97.62 | WT | WT | WT | WT |
48 | M | 69 | 133,275 | 132 | 132,908 | 97.57 | 3,087 | 97.62 | WT | WT | WT | G12S (6.40%) |
49 | M | 65 | 92,859 | 126 | 91,962 | 96.90 | 2,122 | 97.62 | WT | WT | WT | G12C (3.30%) |
50 | M | 77 | 47,845 | 130 | 47,653 | 97.32 | 1,104 | 97.62 | WT | WT | WT | Q61H (4.50%) |
51 | M | 82 | 23,283 | 129 | 23,118 | 97.44 | 5,363 | 97.62 | WT | WT | WT | WT |
52 | F | 77 | 31,713 | 129 | 31,599 | 97.86 | 9,363 | 97.62 | WT | WT | WT | WT |
53 | M | 84 | 121,037 | 129 | 120,379 | 97.44 | 2,793 | 97.62 | WT | WT | WT | G13S (0.20%) |
54 | F | 73 | 73,937 | 129 | 73,230 | 97.42 | 1,699 | 97.62 | WT | WT | WT | WT |
55 | M | 66 | 136,734 | 131 | 136,185 | 97.37 | 3,157 | 97.62 | WT | WT | WT | WT |
56 | M | 69 | 102,126 | 130 | 101,718 | 97.30 | 2,356 | 97.62 | WT | WT | WT | WT |
57 | M | 65 | 103,211 | 131 | 102,957 | 97.48 | 2,390 | 97.62 | WT | WT | WT | WT |
58 | M | 65 | 73,517 | 129 | 73,310 | 97.32 | 1,699 | 97.62 | WT | WT | WT | WT |
59 | M | 81 | 163,403 | 130 | 162,818 | 97.33 | 3,773 | 97.62 | WT | WT | WT | WT |
60 | M | 68 | 182,161 | 130 | 181,087 | 97.19 | 4,190 | 97.62 | WT | WT | WT | WT |
61 | F | 54 | 64,662 | 127 | 63,955 | 97.52 | 1,485 | 97.62 | WT | WT | WT | WT |
62 | F | 64 | 119,320 | 130 | 118,669 | 97.21 | 2,747 | 97.62 | WT | WT | WT | A59V (0.20%) |
63 | F | 67 | 103,023 | 128 | 102,573 | 97.79 | 2,388 | 97.62 | WT | WT | ELREA (5.40%) | WT |
64 | F | 61 | 173,021 | 127 | 172,314 | 97.55 | 4,002 | 97.62 | WT | WT | ELREA (0.70%) | WT |
Patients characteristics, SiRe® next generation sequencing (NGS) panel run metric parameters (reads, mean read length in base pair, number of mapped reads, percentage of read on target, average reads per amplicon, uniformity of amplicon coverage) and genes mutational status with relative mutated allele frequency are reported for each sample.