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Intra- and intertaxon analyses of demographic history and divergence. (A) MSMC estimates of the effective population size (Ne) of vinifera based on two separate runs of four individuals. The solid line represents wine grapes, and the dashed line is table grapes. (B) MSMC analysis of cross-coalescence (y axis) based on comparisons between sylvestris and either wine or table grapes. (C) Divergence time and past Ne changes inferred by the SMC++ analyses, based on unphased genotypes.
