Skip to main content
. 2017 Oct 16;114(44):E9395–E9402. doi: 10.1073/pnas.1715320114

Table S1.

PCR and sequencing primers

cDNA and RNA templates Sequence, 5′→ 3′
Cloning Mecp2 target plasmids
 mMecp2 E1 Fwd EcoRI gcgcgaattccaccatggccgccgctgccgccac
 mMecp2 E1 Rev KpnI no stop codon gcgcgggtaccgctaactctctcggtcacgggc
 mMecp2 W104X mut primer Fwd caccttgcctgaaggttagacacgaaagcttaaac
 mMecp2 W104X mut primer Rev gtttaagctttcgtgtctaaccttcaggcaaggtg
 mMecp2 R106Q mut primer Fwd cctgaaggttggacacaaaagcttaaacaaagg
 mMecp2 R106Q mut primer Rev cctttgtttaagcttttgtgtccaaccttcagg
 mMecp2 R306H mut primer Fwd cccatcaagaagcacaagacccgggag
 mMecp2 R306H mut primer Rev ctcccgggtcttgtgcttcttgatggg
Cloning Editase plasmids (pGM1090, pGM1091)
 Editase EcoRI Kozak HA Fwd gaattcgccaccatggtgtacccctatgacgtgcctgactacgccagcggctatccatacgatgtccccgattatgctt
 Editase HA BspEI Rev ccggaagcataatcggggacatcgtatggatagccgcaggcgtagtcaggcacgtcataggggtaccatggtggcg
 EGFP F2 caccatcttcttcaaggacgac
 SV40 3xNLS Rev gacaatccggaggtggatcctacctttctctt
 hDD E488Q Fwd aatagagtctggtcaggggacgattcc
 hDD E488Q Rev ggaatcgtcccctgaccagactctatt
Guide RNA sequences
 mMecp2 W104X 2xBoxB Guide Fwd caccgtcctttgtttggccctgaaaaagggccctttcgtgtccaaccttcaggcaaggggccctgaaaaagggccggtcatcatac
 mMecp2 W104X 2xBoxB Guide Rev aaaagtatgatgaccggccctttttcagggccccttgcctgaaggttggacacgaaagggccctttttcagggccaaacaaaggac
 mMecp2 R106Q 2xBoxB Guide Fwd caccgcagacttcctggccctgaaaaagggcctttaagctttcgtgtccaaccttcaggcaggccctgaaaaagggcctggggtcatc
 mMecp2 R106Q 2xBoxB Guide Rev aaaagatgaccccaggccctttttcagggcctgcctgaaggttggacacgaaagcttaaaggccctttttcagggccaggaagtctgc
 mMecp2 R306H 2xBoxB Guide Fwd Caccgatgctgaccgtggccctgaaaaagggccccgggtcttgcgcttcttgatgggagcaggccctgaaaaagggcctctcatgcaca
 mMecp2 R306H 2xBoxB Guide Rev Aaaatgtgcatgagaggccctttttcagggcctgctccccatcaagaagcgcaagacccggggccctttttcagggccacggtcagcatc
 mMecp2 R106Q Off-target mismatch 2xBoxB Guide Fwd Caccgcagacttcctggccctgaaaaagggcctttaagctttccgggtccaaccttcaggcaggccctgaaaaagggcctggggtcatc
 mMecp2 R106Q Off-target mismatch 2xBoxB Guide Rev aaaagatgaccccaggccctttttcagggcctgcctgaaggttggacccgaaagcttaaaggccctttttcagggccaggaagtctgc
Amplification of Mecp2-eGFP cDNA
 CMV-mMecp2 ATG Fwd tcaagcttcgaattccaccatggcc
 GFP-N3 Linker Rev ccttgctcaccatggtggcga
Amplification of endogenous Mecp2 cDNA
 mMecp2-14 mMecp2 ATG Fwd aacccgtccggaaaatggcc
 mMecp2-3′UTR+92 Rev ggaagctttgtcagagccctacccataag
Sequencing primers for Mecp2 RT-PCR
 mMecp2 554 Rev ctcctggaggggctccctctc
 mMecp2 914 Rev gaccgtatggaagactccttca
 mMecp2 1122 Rev actgctgctgcgcccctt
Cloning of plasmids pGM1257 and pGM1258
 hU6 AflII Fwd gtgtcttaaggagggcctatttcccatgatt
 hU6 MfeI Fwd gtgtcaattggagggcctatttcccatgatt
 hU6 NheI Fwd gtgtgctagcgagggcctatttcccatgatt
 hU6 SacI Fwd gtgtgagctcgagggcctatttcccatgatt
 hU6 SpeI Fwd gtgtactagtgagggcctatttcccatg
 hU6 (m) NdeI Fwd gtgtcatatgcttaccgtaacttgaaag
 R106QgV2 AflII Rev atatcttaagaaaaaagatgaccccaggccct
 R106QgV2 ApaI Rev cacagggcccaaaaaagatgaccccaggccct
 R106QgV2 MfeI Rev atatcaattgaaaaaagatgaccccaggccct
 R106QgV2 SacI Rev atatgagctcaaaaaagatgaccccaggccct
 R106QgV2 SpeI Rev atatactagtaaaaaagatgaccccaggccct
 R106QgV2 (+2)ApaI Rev gcgcgggcccttcgaagctagcaaaaaagatgaccccaggccct
Cloning of Editase into plasmid pGM1257
 2xHA Editase Fwd NcoI Kozak attcgccaccatggtgtacccctatgacgtg
 Editase EcoRI Rev gcgcgaattctcaatggtgatggtgatggt