Cloning Mecp2 target plasmids |
|
mMecp2 E1 Fwd EcoRI |
gcgcgaattccaccatggccgccgctgccgccac |
mMecp2 E1 Rev KpnI no stop codon |
gcgcgggtaccgctaactctctcggtcacgggc |
mMecp2 W104X mut primer Fwd |
caccttgcctgaaggttagacacgaaagcttaaac |
mMecp2 W104X mut primer Rev |
gtttaagctttcgtgtctaaccttcaggcaaggtg |
mMecp2 R106Q mut primer Fwd |
cctgaaggttggacacaaaagcttaaacaaagg |
mMecp2 R106Q mut primer Rev |
cctttgtttaagcttttgtgtccaaccttcagg |
mMecp2 R306H mut primer Fwd |
cccatcaagaagcacaagacccgggag |
mMecp2 R306H mut primer Rev |
ctcccgggtcttgtgcttcttgatggg |
Cloning Editase plasmids (pGM1090, pGM1091) |
|
Editase EcoRI Kozak HA Fwd |
gaattcgccaccatggtgtacccctatgacgtgcctgactacgccagcggctatccatacgatgtccccgattatgctt |
Editase HA BspEI Rev |
ccggaagcataatcggggacatcgtatggatagccgcaggcgtagtcaggcacgtcataggggtaccatggtggcg |
EGFP F2 |
caccatcttcttcaaggacgac |
SV40 3xNLS Rev |
gacaatccggaggtggatcctacctttctctt |
hDD E488Q Fwd |
aatagagtctggtcaggggacgattcc |
hDD E488Q Rev |
ggaatcgtcccctgaccagactctatt |
Guide RNA sequences |
|
mMecp2 W104X 2xBoxB Guide Fwd |
caccgtcctttgtttggccctgaaaaagggccctttcgtgtccaaccttcaggcaaggggccctgaaaaagggccggtcatcatac |
mMecp2 W104X 2xBoxB Guide Rev |
aaaagtatgatgaccggccctttttcagggccccttgcctgaaggttggacacgaaagggccctttttcagggccaaacaaaggac |
mMecp2 R106Q 2xBoxB Guide Fwd |
caccgcagacttcctggccctgaaaaagggcctttaagctttcgtgtccaaccttcaggcaggccctgaaaaagggcctggggtcatc |
mMecp2 R106Q 2xBoxB Guide Rev |
aaaagatgaccccaggccctttttcagggcctgcctgaaggttggacacgaaagcttaaaggccctttttcagggccaggaagtctgc |
mMecp2 R306H 2xBoxB Guide Fwd |
Caccgatgctgaccgtggccctgaaaaagggccccgggtcttgcgcttcttgatgggagcaggccctgaaaaagggcctctcatgcaca |
mMecp2 R306H 2xBoxB Guide Rev |
Aaaatgtgcatgagaggccctttttcagggcctgctccccatcaagaagcgcaagacccggggccctttttcagggccacggtcagcatc |
mMecp2 R106Q Off-target mismatch 2xBoxB Guide Fwd |
Caccgcagacttcctggccctgaaaaagggcctttaagctttccgggtccaaccttcaggcaggccctgaaaaagggcctggggtcatc |
mMecp2 R106Q Off-target mismatch 2xBoxB Guide Rev |
aaaagatgaccccaggccctttttcagggcctgcctgaaggttggacccgaaagcttaaaggccctttttcagggccaggaagtctgc |
Amplification of Mecp2-eGFP cDNA |
|
CMV-mMecp2 ATG Fwd |
tcaagcttcgaattccaccatggcc |
GFP-N3 Linker Rev |
ccttgctcaccatggtggcga |
Amplification of endogenous Mecp2 cDNA |
|
mMecp2-14 mMecp2 ATG Fwd |
aacccgtccggaaaatggcc |
mMecp2-3′UTR+92 Rev |
ggaagctttgtcagagccctacccataag |
Sequencing primers for Mecp2 RT-PCR |
|
mMecp2 554 Rev |
ctcctggaggggctccctctc |
mMecp2 914 Rev |
gaccgtatggaagactccttca |
mMecp2 1122 Rev |
actgctgctgcgcccctt |
Cloning of plasmids pGM1257 and pGM1258 |
|
hU6 AflII Fwd |
gtgtcttaaggagggcctatttcccatgatt |
hU6 MfeI Fwd |
gtgtcaattggagggcctatttcccatgatt |
hU6 NheI Fwd |
gtgtgctagcgagggcctatttcccatgatt |
hU6 SacI Fwd |
gtgtgagctcgagggcctatttcccatgatt |
hU6 SpeI Fwd |
gtgtactagtgagggcctatttcccatg |
hU6 (m) NdeI Fwd |
gtgtcatatgcttaccgtaacttgaaag |
R106QgV2 AflII Rev |
atatcttaagaaaaaagatgaccccaggccct |
R106QgV2 ApaI Rev |
cacagggcccaaaaaagatgaccccaggccct |
R106QgV2 MfeI Rev |
atatcaattgaaaaaagatgaccccaggccct |
R106QgV2 SacI Rev |
atatgagctcaaaaaagatgaccccaggccct |
R106QgV2 SpeI Rev |
atatactagtaaaaaagatgaccccaggccct |
R106QgV2 (+2)ApaI Rev |
gcgcgggcccttcgaagctagcaaaaaagatgaccccaggccct |
Cloning of Editase into plasmid pGM1257 |
|
2xHA Editase Fwd NcoI Kozak |
attcgccaccatggtgtacccctatgacgtg |
Editase EcoRI Rev |
gcgcgaattctcaatggtgatggtgatggt |