Table 1. Mapping statistics for sea cucumber RNA types from Illumina sequencing reads.
| DO2_1 | DO2_2 | DO2_3 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| lib | Total | % of Total | uniq | % of uniq | Total | % of Total | uniq | % of uniq | Total | % of Total | uniq | % of uniq |
| All clean reads | 9,727,619 | 100.0000 | 560,047 | 100.0000 | 9,914,296 | 100.0000 | 404,613 | 100.0000 | 11,004,979 | 100.0000 | 143,712 | 100.0000 |
| miRNA | 539,420 | 5.5452 | 99 | 0.0177 | 1,063,953 | 10.7315 | 180 | 0.0445 | 2,841,858 | 25.8234 | 299 | 0.2081 |
| rRNA | 573,572 | 5.8963 | 10,677 | 1.9064 | 709,358 | 7.1549 | 10,094 | 2.4947 | 489,000 | 4.4434 | 4,844 | 3.3706 |
| tRNA | 31,558 | 0.3244 | 1,107 | 0.1977 | 44,265 | 0.4465 | 1,363 | 0.3369 | 51,574 | 0.4686 | 926 | 0.6443 |
| snoRNA | 1,146 | 0.0118 | 79 | 0.0141 | 1,219 | 0.0123 | 102 | 0.0252 | 1,572 | 0.0143 | 91 | 0.0633 |
| snRNA | 139,191 | 1.4309 | 469 | 0.0837 | 120,438 | 1.2148 | 511 | 0.1263 | 154,751 | 1.4062 | 373 | 0.2595 |
| novel miRNA | 89 | 0.0009 | 11 | 0.0020 | 536 | 0.0054 | 85 | 0.0210 | 3,164 | 0.0288 | 179 | 0.1246 |
| Unann | 8,442,643 | 86.7904 | 547,605 | 97.7784 | 7,974,527 | 80.4346 | 392,278 | 96.9514 | 7,463,060 | 67.8153 | 137,000 | 95.3295 |
| DO4_1 | DO4_2 | DO4_3 | ||||||||||
| lib | Total | % of Total | uniq | % of uniq | Total | % of Total | uniq | % of uniq | Total | % of Total | uniq | % of uniq |
| All clean reads | 11,492,366 | 100.0000 | 221,088 | 100.0000 | 10,058,997 | 100.0000 | 157,861 | 100.0000 | 11,151,849 | 100.0000 | 100,967 | 100.0000 |
| miRNA | 10,541,644 | 91.7274 | 142 | 0.0642 | 8,404,678 | 83.5538 | 121 | 0.0766 | 9,326,745 | 83.6341 | 185 | 0.1832 |
| rRNA | 26,732 | 0.2326 | 1,566 | 0.7083 | 36,744 | 0.3653 | 2,396 | 1.5178 | 37,310 | 0.3346 | 2,438 | 2.4147 |
| tRNA | 6,474 | 0.0563 | 303 | 0.1370 | 7,643 | 0.0760 | 472 | 0.2990 | 7,608 | 0.0682 | 629 | 0.6230 |
| snoRNA | 327 | 0.0028 | 35 | 0.0158 | 533 | 0.0053 | 19 | 0.0120 | 202 | 0.0018 | 22 | 0.0218 |
| snRNA | 413 | 0.0036 | 48 | 0.0217 | 223 | 0.0022 | 32 | 0.0203 | 348 | 0.0031 | 39 | 0.0386 |
| novel miRNA | 797 | 0.0069 | 39 | 0.0176 | 235 | 0.0023 | 11 | 0.0070 | 168 | 0.0015 | 21 | 0.0208 |
| Unann | 915,979 | 7.9703 | 218,955 | 99.0352 | 1,608,941 | 15.9950 | 154,810 | 98.0673 | 1,779,468 | 15.9567 | 97,633 | 96.6979 |
| DO8_1 | DO8_2 | DO8_3 | ||||||||||
| lib | Total | % of Total | uniq | % of uniq | Total | % of Total | uniq | % of uniq | Total | % of Total | uniq | % of uniq |
| All clean reads | 11,169,604 | 100.0000 | 156,487 | 100.0000 | 11,480,552 | 100.0000 | 134,370 | 100.0000 | 10,544,806 | 100.0000 | 180,413 | 100.0000 |
| miRNA | 10,182,919 | 91.1663 | 103 | 0.0658 | 9,740,816 | 84.8462 | 118 | 0.0878 | 8,056,432 | 76.4019 | 117 | 0.0649 |
| rRNA | 17,172 | 0.1537 | 1,055 | 0.6742 | 14,982 | 0.1305 | 1,032 | 0.7680 | 47,102 | 0.4467 | 3,036 | 1.6828 |
| tRNA | 5,624 | 0.0504 | 339 | 0.2166 | 6,673 | 0.0581 | 429 | 0.3193 | 10,780 | 0.1022 | 766 | 0.4246 |
| snoRNA | 457 | 0.0041 | 14 | 0.0089 | 308 | 0.0027 | 14 | 0.0104 | 454 | 0.0043 | 24 | 0.0133 |
| snRNA | 226 | 0.0020 | 31 | 0.0198 | 196 | 0.0017 | 19 | 0.0141 | 193 | 0.0018 | 28 | 0.0155 |
| novel miRNA | 58 | 0.0005 | 3 | 0.0019 | 55 | 0.0005 | 4 | 0.0030 | 74 | 0.0007 | 8 | 0.0044 |
| Unann | 963,148 | 8.6229 | 154,942 | 99.0127 | 1,717,522 | 14.9603 | 132,754 | 98.7974 | 2,429,771 | 23.0423 | 176,434 | 97.7945 |
Lib, Library; uniq, unique data; rRNA, ribosomal RNA; tRNA, transfer RNA; snoRNA, small nuclear RNA; snRNA, small nucleolar RNA; Unann, unannotated data.