Table 3. Location of loci with SNPs in LD with inversions.
chr2L | chr2R | chr3L | chr3R | chrX | ||
---|---|---|---|---|---|---|
In(2L)t | All loci | 370 | 1 | 0 | 1 | 1 |
IAL | 11 | 0 | 0 | 0 | 0 | |
In(3R)Mo | All loci | 0 | 2 | 0 | 663 | 0 |
IAL | 0 | 0 | 0 | 110 | 0 |
Loci are identified as BDGP v5.49 and Affymetrix library v.35 annotated gene regions containing SNPs in significant LD with the inversion (see Materials and Methods). chr, chromosome; IAL, inversion-affected loci; BDGP, Berkeley Drosophila Genome Project; SNP, single nucleotide polymorphism; LD, linkage disequilibrium.