| Antibodies |
| Anti-Myc-tag-488 monoclonal antibody, Clone 4A6 |
EMD-Millipore |
Cat# 05-724 |
| Alexa-Fluor 488 labeled goat anti-mouse IgG mAb |
Molecular Probes (ThermoFisher) |
Cat# R37120
|
| Bacterial and Virus Strains |
| DH5α |
ThermoFisher |
Cat# 18258012 |
| DH10Bac |
ThermoFisher |
Cat# 10361012 |
| Biological Samples |
| Human O erythrocytes |
Vaccine Center at Emory University |
N/A |
| Human B-cell line Tn4 |
(Mi et al., 2012) |
N/A |
| Chemicals, Peptides, and Recombinant Proteins |
| RNeasy mini kit |
Qiagen |
Cat No./ID: 74104 |
| SuperScript III Reverse Transcriptase |
ThermoFisher |
|
| EZ-link Sulfo-NHS-LC-Biotin |
ThermoFisher |
Cat# 21335 |
| QuickChange Lightning Multi Mutagenesis Kit |
Agilent Technologies |
Cat# 210515 |
| UEA-1 |
Vector Laboratories |
Cat# L-1060 |
| H-trisaccharide Type II |
Sigma |
Cat# F7297 |
| LNnT |
Consortium for Functional Glycomics |
N/A |
| 2′-fucosyllactose |
Consortium for Functional Glycomics |
N/A |
| Deposited Data |
| Crystal Structure, RBC36 (APO) |
This paper |
PDB 5UFD |
| Crystal Structure, RBC36 + 2′-fucosyllactose |
This paper |
PDB 5UFF |
| Crystal Structure, O13 (APO) |
This paper |
PDB 5UEI |
| Crystal Structure, O13 + H-trisaccharide |
This paper |
PDB 5UF1 |
| Crystal Structure, O13 + LNnT |
This paper |
PDB 5UF4 |
| Crystal Structure, Tn4-22 (APO) |
This paper |
PDB 5UFB |
| Crystal Structure, Tn4-22 + H-trisaccharide |
This paper |
PDB 5UFC |
| Experimental Models: Cell Lines |
| Human cells: HEK-293F (Freestyle 293F) |
ThemoFisher |
Cat# R79007
|
| Human cells: HEK-293S (GnTI−) |
ATCC |
RRID:CVCL_A785 |
| Insect cells: Sf9 (Spodoptera frugiperda)
|
ThermoFisher |
Cat# 11496015 |
| Insect cells: Hi5 cells (Trichoplusia ni)
|
ThermoFisher |
Cat# B85502
|
| Experimental Models: Organisms/Strains |
| Petromyzon marinus |
Lamprey Services |
Larval lampreys |
| Oligonucleotides |
| VLRb LRRNT: GCATGTCCCTCGCAGTG |
IDT |
www.idtdna.com |
| VLRb LRRCT: CGTGGTCGTAGCAACGTAG |
IDT |
www.idtdna.com |
| O13-N81H, N82Q mutagenesis primer: CAGACCCTGTGGCTGCACCAGAACCAGCTGACCTCC |
IDT |
www.idtdna.com |
| Recombinant DNA |
| Plasmid: pCT-ESO-BDNF YSD vector |
(Burns et al., 2014) |
Gift from Eric Shusta |
| Plasmid: pCDH |
Systems Biosciences |
Cat# CD500A-1 |
| Plasmid: pFastBac1 |
ThermoFisher |
Cat# 10360014 |
| Plasmid: phCMV3 |
Amsbio |
P003300 |
| Software and Algorithms |
| HKL2000 |
(Otwinowski and Minor, 1997) |
hkl-xray.com/hkl-2000 |
| XDS |
(Kabsch, 2010) |
xds.mpimf-heidelberg.mpg.de/ |
| PHENIX |
(Adams et al., 2010) |
hwww.phenix-online.org/
|
| Coot |
(Emsley et al., 2010) |
www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
| PDB validation server |
PDB |
validate.wwpdb.org |
| Other |
| CFG Glycan array |
Consortium for Function Glycomics |
Versions 5.0, 5.1 |
| Stanford Synchrotron Radiation Lightsource (SSRL) |
Stanford |
Beamline 12-2 |
| Advanced Photon Source (APS) |
Argonne National Lab |
23ID-B, 23ID-D |