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. Author manuscript; available in PMC: 2018 Nov 7.
Published in final edited form as: Structure. 2017 Oct 5;25(11):1667–1678.e4. doi: 10.1016/j.str.2017.09.003
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Anti-Myc-tag-488 monoclonal antibody, Clone 4A6 EMD-Millipore Cat# 05-724
Alexa-Fluor 488 labeled goat anti-mouse IgG mAb Molecular Probes (ThermoFisher) Cat# R37120
Bacterial and Virus Strains
DH5α ThermoFisher Cat# 18258012
DH10Bac ThermoFisher Cat# 10361012
Biological Samples
Human O erythrocytes Vaccine Center at Emory University N/A
Human B-cell line Tn4 (Mi et al., 2012) N/A
Chemicals, Peptides, and Recombinant Proteins
RNeasy mini kit Qiagen Cat No./ID: 74104
SuperScript III Reverse Transcriptase ThermoFisher
EZ-link Sulfo-NHS-LC-Biotin ThermoFisher Cat# 21335
QuickChange Lightning Multi Mutagenesis Kit Agilent Technologies Cat# 210515
UEA-1 Vector Laboratories Cat# L-1060
H-trisaccharide Type II Sigma Cat# F7297
LNnT Consortium for Functional Glycomics N/A
2′-fucosyllactose Consortium for Functional Glycomics N/A
Deposited Data
Crystal Structure, RBC36 (APO) This paper PDB 5UFD
Crystal Structure, RBC36 + 2′-fucosyllactose This paper PDB 5UFF
Crystal Structure, O13 (APO) This paper PDB 5UEI
Crystal Structure, O13 + H-trisaccharide This paper PDB 5UF1
Crystal Structure, O13 + LNnT This paper PDB 5UF4
Crystal Structure, Tn4-22 (APO) This paper PDB 5UFB
Crystal Structure, Tn4-22 + H-trisaccharide This paper PDB 5UFC
Experimental Models: Cell Lines
Human cells: HEK-293F (Freestyle 293F) ThemoFisher Cat# R79007
Human cells: HEK-293S (GnTI−) ATCC RRID:CVCL_A785
Insect cells: Sf9 (Spodoptera frugiperda) ThermoFisher Cat# 11496015
Insect cells: Hi5 cells (Trichoplusia ni) ThermoFisher Cat# B85502
Experimental Models: Organisms/Strains
Petromyzon marinus Lamprey Services Larval lampreys
Oligonucleotides
VLRb LRRNT: GCATGTCCCTCGCAGTG IDT www.idtdna.com
VLRb LRRCT: CGTGGTCGTAGCAACGTAG IDT www.idtdna.com
O13-N81H, N82Q mutagenesis primer: CAGACCCTGTGGCTGCACCAGAACCAGCTGACCTCC IDT www.idtdna.com
Recombinant DNA
Plasmid: pCT-ESO-BDNF YSD vector (Burns et al., 2014) Gift from Eric Shusta
Plasmid: pCDH Systems Biosciences Cat# CD500A-1
Plasmid: pFastBac1 ThermoFisher Cat# 10360014
Plasmid: phCMV3 Amsbio P003300
Software and Algorithms
HKL2000 (Otwinowski and Minor, 1997) hkl-xray.com/hkl-2000
XDS (Kabsch, 2010) xds.mpimf-heidelberg.mpg.de/
PHENIX (Adams et al., 2010) hwww.phenix-online.org/
Coot (Emsley et al., 2010) www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
PDB validation server PDB validate.wwpdb.org
Other
CFG Glycan array Consortium for Function Glycomics Versions 5.0, 5.1
Stanford Synchrotron Radiation Lightsource (SSRL) Stanford Beamline 12-2
Advanced Photon Source (APS) Argonne National Lab 23ID-B, 23ID-D