Table 1. Genetic diversity and fixation indices at the microsatellite and SNP markers for A. ostoyae from the south-western France.
Marker | NA (%) | Ar | He | Ho | FIS |
---|---|---|---|---|---|
Microsatellite | |||||
AoB8A4Z | 16.0 | 10.24 | 0.804 | 0.734 | 0.087 |
AoB8PN1a | 3.9 | 2.00 | 0.243 | 0.000 | 1.000*** |
AoB9MK4 | 7.8 | 3.47 | 0.457 | 0.432 | 0.055 |
AoCE9NKa | 23.3 | 4.93 | 0.375 | 0.082 | 0.781*** |
AoCFZOLa | 6.3 | 2.45 | 0.016 | 0.005 | 0.666*** |
AoSSR21aa | 43.2 | 7.00 | 0.706 | 0.368 | 0.480*** |
AoSSR74aa | 19.9 | 10.62 | 0.821 | 0.358 | 0.565*** |
AoSSR75aa | 7.8 | 8.60 | 0.640 | 0.368 | 0.425*** |
Arm05 | 3.4 | 3.97 | 0.599 | 0.618 | −0.033 |
Arm09a | 3.9 | 8.42 | 0.627 | 0.409 | 0.348*** |
Arm15 | 2.9 | 5.00 | 0.559 | 0.490 | 0.123 |
Arm16 | 8.3 | 7.83 | 0.720 | 0.714 | 0.008 |
CAG25a | 11.2 | 4.64 | 0.564 | 0.525 | 0.069 |
CAG77a | 6.8 | 2.85 | 0.304 | 0.318 | −0.045 |
SNP | |||||
FG487_1 | 0.0 | 2.00 | 0.361 | 0.413 | −0.144 |
FG524_3 | 1.0 | 2.00 | 0.358 | 0.368 | −0.027 |
FG529_1 | 7.8 | 2.00 | 0.342 | 0.311 | 0.093 |
FG543_5 | 0.0 | 2.00 | 0.403 | 0.403 | 0.001 |
FG652_1 | 1.9 | 2.00 | 0.497 | 0.505 | −0.016 |
FG686_1 | 1.0 | 2.00 | 0.304 | 0.304 | −0.000 |
FG691_1 | 22.3 | 2.00 | 0.498 | 0.488 | 0.021 |
FG692_2 | 3.4 | 2.00 | 0.408 | 0.407 | 0.001 |
FG698_3 | 1.0 | 2.00 | 0.491 | 0.515 | −0.048 |
FG716_1 | 1.0 | 2.00 | 0.265 | 0.294 | −0.109 |
FG716_8a | 1.0 | 2.00 | 0.262 | 0.230 | 0.120 |
FG730_3 | 1.5 | 2.00 | 0.351 | 0.335 | 0.047 |
FG735_1 | 1.0 | 2.00 | 0.484 | 0.451 | 0.068 |
FG747_4 | 0.5 | 2.00 | 0.207 | 0.234 | −0.130 |
FG756_1 | 0.0 | 2.00 | 0.500 | 0.485 | 0.029 |
FG762_5 | 1.0 | 2.00 | 0.295 | 0.299 | −0.015 |
FG771_1a | 1.0 | 2.00 | 0.310 | 0.294 | 0.051 |
FG771_3 | 1.0 | 2.00 | 0.464 | 0.412 | 0.112 |
FG788_1a | 1.0 | 2.00 | 0.128 | 0.088 | 0.312*** |
FG848_1 | 0.0 | 2.00 | 0.323 | 0.316 | 0.022 |
FG848_6a | 1.0 | 2.00 | 0.216 | 0.206 | 0.045 |
FG893_1 | 1.5 | 2.00 | 0.354 | 0.340 | 0.040 |
MS334_3 | 0.0 | 2.00 | 0.401 | 0.398 | 0.008 |
MS441_2 | 0.5 | 2.00 | 0.229 | 0.215 | 0.064 |
MS452_3 | 0.0 | 2.00 | 0.350 | 0.325 | 0.072 |
MS467_8a | 17.0 | 2.00 | 0.444 | 0.181 | 0.592*** |
MS481_1 | 0.5 | 2.00 | 0.089 | 0.093 | −0.046 |
All | |||||
Multilocus | 5.7 | 3.32 | 0.409 | 0.349 | 0.146*** |
Abbreviations: Ar, allelic richness; FIS, fixation index (*P⩽0.05; **⩽0.01; ***⩽0.001); He, unbiased expected heterozygosity (Nei, 1973); Na (%), mean percentage of missing allele.
Markers excluded from analyses.