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. 2017 Nov 6;5:e3986. doi: 10.7717/peerj.3986

Table 3. MRPP and PERMDISP test for significant difference between two culture stages.

MRPP test shows differences in intestinal microbiota between culture stages. Observe-delta represents the difference within group. Expect-delta represents the difference between groups. The difference between groups is larger than the difference within group (P value < 0.01). PERMDISP test whether the intestinal microbiota varied at different culture stages. The t value is calculated by Levene’s test. The asterisk represents that there is significant difference in groups (P value < 0.05). The two-asterisk represents that there is extremely significant difference in groups (P value < 0.01).

Group MRPP PERMDISP
Observed-delta Expected-delta P value t value P value
Stage 1 vs Stage 2 0.2570 0.3641 0.001∗∗ 3.944 0.032
Stage 1 vs Stage 3 0.3562 0.4173 0.001∗∗ 1.149 0.001∗∗
Stage 1 vs Stage 4 0.2933 0.4677 0.001∗∗ 0.882 0.014
Stage 1 vs Stage 5 0.3341 0.4158 0.001∗∗ 8.808 0.005∗∗
Stage 2 vs Stage 3 0.3351 0.4269 0.002∗∗ 15.336 0.016
Stage 2 vs Stage 4 0.3600 0.4871 0.001∗∗ 7.536 0.002∗∗
Stage 2 vs Stage 5 0.3054 0.3201 0.024 6.575 0.023
Stage 3 vs Stage 4 0.2388 0.3006 0.001∗∗ 3.351 0.004∗∗
Stage 3 vs Stage 5 0.2661 0.2769 0.049 10.261 0.039
Stage 4 vs Stage 5 0.3121 0.3546 0.001∗∗ 5.906 0.002∗∗