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Derivation of differentially methylated cytosines (DMCs) and differentially methylated regions (DMRs) from BS-Seq Data
| CG | CHG | CHH | |
|---|---|---|---|
| Cytosine sites with depth > =5 | 43,645,671 | 40,463,671 | 116,652,010 |
| Cytosine sites with P < 0.05 | 2,476,686 | 2,058,714 | 1,611,070 |
| DMC (Adjusted P < 0.05) | 116,600 | 37,243 | 840 |
| DMC cluster (> = 4 DMC & > =50 bps) | 2832 | 615 | 4 |
| DMR | 1777 | 573 | 3 |
