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. 2017 Oct 27;13(10):e1007065. doi: 10.1371/journal.pgen.1007065

Table 3. Trends in highly related WGS parasite sample pairs.

Predictor Year 2001–2014
(178 parasite samples)
Year 2014
(44 parasite samples)
βunadjusted
(p-value)
βadjusted
(p-value)
βadjusted 2014
(p-value)
βunadjusted
(p-value)
βadjusted
(p-value)
(Intercept) -4.65e+00 (0.355) -3.90e+00 (0.936) -4.44e+00 (0.565) -1.05e+00 (1.000) -1.85e+01 (0.002)
ΔDistance (km) -8.60e-04 (0.885) -7.58e-03 (0.373) -2.00e-02 (0.035) -2.33e-02 (0.002) -2.64e-02 (0.002)
Maela -1.49e+01 (0.002) -1.56e+01 (0.002) -1.54e+01 (0.002) -1.55e+01 (0.012) -1.80e+01 (0.002)
Wang Pha 2.53e-01 (0.403) -7.68e-01 (0.027) -2.52e-01 (0.490) -4.40e-01 (0.321) -4.42e-01 (0.330)
Mae Kon Ken 4.65e+00 (0.950) 2.00e+00 (1.000) 1.05e+00 (1.001) 1.05e+00 (0.619) 1.07e+00 (0.638)
Mawker Thai 2.85e+00 (0.310) 1.84e-01 (0.809) -7.61e-01 (0.345) -7.47e-01 (0.102) -9.49e-01 (0.039)
Season NA (NA) 1.99e+00 (0.002) 1.48e+00 (0.002) NA (NA) 1.82e+01 (0.002)
ΔWeeks NA (NA) -1.48e-02 (0.002) -1.48e-02 (0.002) NA (NA) -1.38e-02 (0.779)
ΔWeeks × Season NA (NA) 6.61e-04 (0.514) 4.17e-03 (0.002) NA (NA) -1.11e-01 (0.066)
ΔWeeks × ΔDistance NA (NA) -1.26e-04 (0.002) 2.92e-05 (0.090) NA (NA) 5.95e-04 (0.218)
Year NA (NA) NA (NA) 1.97e+00 (0.005) NA (NA) NA (NA)

P-values are two-tailed Monte Carlo estimates based on 1000 permutations of highly related parasite sample pair labels (equal to 1 if π^IBD>0.5  and 0 otherwise).