Table 2. SNP heritability estimates per principal component axis.
The standard error of the estimate derived from LMM in GEMMA is shown. The heritability of molar shape is a weighted sum of the heritability per PC, the weights being the percentage of total variation represented by each PC.
| PC | %var | Heritability per PC | Error | Molar herit |
|---|---|---|---|---|
| 1 | 18.9 | 0.83 | 0.09 | 15.8 |
| 2 | 15.4 | 0.95 | 0.08 | 14.7 |
| 3 | 9.9 | 0.78 | 0.10 | 7.7 |
| 4 | 7.1 | 0.62 | 0.14 | 4.4 |
| 5 | 5.9 | 0.49 | 0.12 | 2.9 |
| 6 | 5.1 | 0.83 | 0.10 | 4.2 |
| 7 | 3.9 | 0.53 | 0.12 | 2.1 |
| 8 | 3.2 | 0.89 | 0.11 | 2.8 |
| 9 | 2.8 | 0.89 | 0.09 | 2.5 |
| 10 | 2.5 | 0.86 | 0.13 | 2.2 |
| 11 | 2.1 | 0.72 | 0.14 | 1.5 |
| 12 | 1.8 | 0.60 | 0.15 | 1.1 |
| 13 | 1.7 | 0.68 | 0.13 | 1.2 |
| 14 | 1.5 | 0.56 | 0.16 | 0.8 |
| 15 | 1.4 | 0.53 | 0.15 | 0.7 |
| 16 | 1.3 | 0.26 | 0.16 | 0.3 |
| 17 | 1.2 | 0.14 | 0.20 | 0.2 |
| 18 | 1 | 0.51 | 0.14 | 0.5 |
| Total Var | 86.7% | |||
| pve for molar shape | 65.50 | |||