Table 2.
Proteina | pI/Charge state | GRAVYc | Aliphatic indexd | Negative residues | Positive residues | Total number of residuese |
---|---|---|---|---|---|---|
WT-OmpG | 4.4/acidic | −0.798 | 55.87 | 55 | 22 | 281 |
FhuA ΔC/Δ5Lb | 5.7/acidic | −0.550 | 60.42 | 57 | 48 | 505 |
FhuA ΔC/Δ5L_25N | 9.3/basic | −0.563 | 58.31 | 34 | 43 | 473 |
FhuA ΔC/Δ7L_30N | 9.6/basic | −0.574 | 57.42 | 27 | 42 | 426 |
All proteins have a 6His+ tag at the C terminus.
This engineered FhuA includes a 33-residue signal peptide at the N terminus.
The GRAVY hydrophobicity parameter was calculated by adding individual hydropathy indexes68 of each residue and dividing by the total number of residues. Increasing positive GRAVY number shows a more hydrophobic protein.
The aliphatic index is given by the relative volume of aliphatic chain-containing residues.69
The total number of residues includes those amino acids from the Gly/Ser-rich containing polypeptide loop and 6×His+ tag.