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. 2017 Nov 9;18:858. doi: 10.1186/s12864-017-4278-1

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© The Author(s). 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Runs of homozygosity (ROH) and extended haplotype homozygosity (EHH) on SSC18. a Individual Large White pigs are represented as horizontal lines, with blue bars indicating a homozygous segment at that position on SSC18. The red bars on top indicate all significant haplotypes in the Large White, with the haplotype LW19 (SSC18:43-44 Mb) indicated in black. Clustered homozygous segments are an indication of a haplotype putative under selection. b Local breakdown of LD in the Large White population at the LW19 haplotype locus. The bifurcation diagram displays haplotypes starting at the BMPER locus and extending either up- or downstream of the BMPER gene. Line thickness represents proportion of haplotypes. Red and yellow bars indicate locations of genes as annotated in Ensembl (release 87)