Table 1.
Description of the data for missing and depleted homozygous haplotypes in three pig breeds. Table shows average and standard deviation (between parenthesis) for all parameters per breed. The number of loci harbours the unique number of genomic windows containing significant haplotypes
| Description | Synthetic boar line | Landrace | Large white |
|---|---|---|---|
| Number of samples | 5488 | 5056 | 12,417 |
| Number of trios | 3806 | 2548 | 8778 |
| Number of haplotypes | 41 | 16 | 88 |
| Number of loci | 32 | 16 | 70 |
| Haplotype length (markers) | 25.4 (18.5) | 19.3 (22.3) | 36.04 (37.0) |
| Haplotypes in window (frequency > 0.5%) | 16.3 (7.8) | 22.2 (10.3) | 25.1 (13.3) |
| Number of carriers | 707.5 (348.9) | 689.9 (290.8) | 972.1 (545.3) |
| Haplotype frequency | 6.4 (3.2) | 6.8 (2.9) | 3.9 (2.2) |
| Homozygous expected | 24.3 (27.6) | 18.4 (10.5) | 22.2 (22.6) |
| Carrier matings with genotyped offspring | 29.9 (31.6) | 36.1 (20.6) | 33.6 (34.6) |
| Carrier matings in pedigree | 72.9 (69.5) | 169.8 (119.0) | 104.7 (107.8) |
| Genotyped carrier progeny | 96.8 (109.7) | 73.75 (42.1) | 88.8 (90.2) |
| % Heterozygous carrier progeny | 55.1 | 60.3 | 53.8 |
| Genes in window | 21.2 (26.3) | 15.8 (22.0) | 19.0 (19.7) |