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. 2017 Nov 7;8:1803. doi: 10.3389/fpls.2017.01803

Table 2.

List of orthologous markers used for validation in pepper.*

Marker name Linkage group Map unit (cM) Marker type (d)CAPS enzyme Forward primer Reverse primer
1. C2At1g05385 3 41.5 dCAPS AccI ACGAACAGCTGATGCAGCAAAGG GACCAGATGAAACAAACTCAGGTAG
2. C2At2g47580 3 46.5 CAPS Hpy188I TAGCGGCGGCGAAGTTCCAC ATCAAACACTACCCACGCCTGTCC
3. C2At4g03200 3 50.9 CAPS RsaI TGGGGCTGAGCCTTCAGGGAA GCCAGCATATCTGCTGCACAGCAC
4. C2At5g42740 3 53 PCR NA AGCACCATTTGAGAAAAATATACCTG ATCCAAGGAATGAAACATTCCACAC
5. TG517 3 55.1 dCAPS BclI CTTCTTCTGCTCAGCAGCAACATCATGA TTTATCGGCTCTCGTTTTGC
6. C2At4g18593 3 59.3 CAPS AluI AGGTGATTGTTATAATCGTGGAGAAAG TTCACAATGCGCACATAAAAGCTTG
7. C2At1g64770 3 61.4 CAPS BstBI TCCGGAGCTGTACTTATTGCACACATC AGCCCAAACGTATTATCCTAAAGAAGAG
8. C2At3g13180 3 61.4 dCAPS RsaI TATTGTTGATCCACAGCCTGGTGAG AGGGAATATGGTGCTTGTATTGAAGG
9. C2At5g62390 3 63.3 CAPS TaqI TGCTACTAACTGTTGATGCCATTGAG TTGGGGGTCGATAACATCAAGC
10. C2At3g63530 3 67.1 dCAPS CfoI CTTGTGTTAGCATTTAGAAAAACTGCG AACATGTGTGCACAAGGTAAAGTGGTC
11. C2At5g23880 3 71.1 CAPS RsaI AGCTAACCTAATCCTTGATACAACACC ACCATCAGAACGACCTTCGAAGTCC
12. C2At1g51160 3 75.1 CAPS DraI TCTTCGGAGGATCAGAGATCAGTCC AACGAACATCCTTGTCCAGGTAATTG
13. C2At5g17170 3 91.9 dCAPS RsaI TTCAAGGGCTATCATTACAAGAGGC CTTGCGAGAAATTCTCTAATAAGTGGT
14. C2At3g03100 3 94.1 CAPS AflII TGGTGCAACACTTGTTGGTGTGG TGGAGCCAGCCATGCCATTC
15. C2At5g41040 3 95.8 CAPS HinfI AGAAGGGGCTGTCTTTGTTGAGGC TCGCGCTTTCCAGACGAAAGCTG
16. C2At5g52820 3 109.5 CAPS AseI TGGGATCTAAATACCCAGACACC ACAGAAAGAACCCAATTTCTGTGC
17. C2At5g49970 3 114.4 CAPS EcoRV AATTGGCAGGCTTGAGTGTTGC TCCCACCATTGTTACCAGGACCAC
18. C2At5g23060 3 119.2 CAPS AseI ACTTAGAGCTTCTTCAGCCACCGC ATGCCAGCACTCTGCATTGCCTC
19. C2At1g18660 3 123.9 CAPS TaqI ACCCTGTGCTTAAAGTTATTATATGAACC ACTGTTCGGCACAATGGACATCTG
20. C2At1g80170 3 125.3 CAPS PvuII TTTAACTTTCCACAAATGCAACAACC TCTTTATTCTAACCCCGTTCTCAGTG
21. C2At3g47640 3 126.7 CAPS AvaII AGCTGCTCGATTTGTAAAGGACATGC TGGCCATACATCATTTGGAGTGGG
22. C2At1g16180 3 128 CAPS RsaI TTCTTGTCTTGCGTCATGCTGTGC ACCAGCAAATGATTTTCATCATCC
23. C2At5g42950 4 139.6 dCAPS SspI CTCTTCTGGAACACATTATCGTCCCAA ACATTTTTGGCACTTGCACCAGTGAC
24. C2At1g75350 4 140.6 CAPS HincII AATGTCGCTCCTCCTTCATTCTCC ATGTATATCCTTCTTCCTGCAGCTCC
25. C2At1g63610 4 142.8 CAPS BsiHKAI TGATGACTGGATATATGTTTAGGAATGC ACGATTCAATTCCTCCACTTCTGCTTC
26. C2At1g20575 4 145 CAPS TaqI AGACACTACTTTGGCCGGGTGTATC ATGATGTCTTCTAGTGCAGACTTCTGG
27. C2At1g42990 4 147.2 CAPS DpnII ATGACCCCGTCGATAAGAAGCG ACCTCACAGCTGCATCTCTATTCCTC
28. C2At1g76080 4 158.6 CAPS AluI TAGTATGGAGGAATTGGATGAAGC TCTTCTCTGCTGTGGAGCTGCAC
29. C2At4g25650 5 0 dCAPS EcoRV AGCGCAAGCTAAAGGAAATTGG AAGTCTGTACTGAACAATCTAGCAAGATA
30. C2At3g52155 5 7.3 dCAPS StyI TTCTCATACCCCACTTGTGAGATTCCA AAGTTGTCCAGATCTACTCAAAGGACG
31. T0635 5 11.1 CAPS PstI TCAACCAACAACAAGGGTCA CCAGGAGCATCACAGTCAAA
32. C2At2g39580 5 14.9 CAPS BsaHI AGATAACTGGTTTGACGAAGTTCCTGG TGAAGCTTCTACCCATACATATTCTGG
33. C2At1g08630 5 18.3 CAPS BslI TATTCTCGGTGATTATTCCCATATCC AGACCATACTTCTTTGCTAGCTCTCC
34. C2At1g60560 5 19.4 CAPS BclI TAGGGAACATAGTGTACAGCATTTGGG TCAGACTATATGATGATTCACATCTTGG
35. T0707 5 34.1 CAPS DpnII TCGTGGATTATGGGCTTCTT TCAAAGTTTTATTGATGATGTTCGAC
36. C2At3g17040 5 36.8 CAPS AseI TGGGGTTGGATGGAGTGGAAAG AGTAGAGGTTACGAATTTCCTCTGC
37. C2At3g51010 5 39.4 CAPS HindIII TCCAAACAATCCCAATGAAGGAAG ACGCTCTACTCGCTTAATCATTTTC
38. C2At1g33970 5 44.6 CAPS BstXI TGGAAGTGCAATAAGTGATGATTGGG TCGTTTCCAACAAATTCAGGTTCAG
39. C2At2g01770 5 49.8 dCAPS TaqI ACCATGTATGAAAGGAGTTGTACCTCG AATTTACAGCAACTTGCATATGGAGA
40. C2At1g27385 5 53.1 CAPS HinfI ACCGTGCATGATGATTCAACTAATGAG AGTACCAATAGCTGTAAAGCCTCTTTC
41. C2At2g46580 5 56.4 dCAPS TaqI TGCTGGTATTTCACTGAAACTTGGG TGTTCATCTAGAGAAGGAAGCCCTCG
42. C2At3g10920 5 70.9 dCAPS AflII TGGCTTGGTGTGGACAAAGAGC GATGAGCACTCATGAAAGTTGGACTTA
43. U221402 5 72.1 PCR NA AAGCCTCCTTGACAAATGCATATAG AGATATAGCTACAGTGGCAGCTTCATC
44. C2At3g55800 5 74.5 CAPS TaqI ATGCTTGTTCTGAGGAAGTTCCTGAG AGTTCGTGTCCACAATACTAGAACCATC
45. C2At3g06440 5 76.8 CAPS BstNI TCGTTAGGATTGATGAAGTTCTATCTAGC GATTCACAACCGGCATTGTAAAATCT
46. C2At4g12590 5 82.1 dCAPS HinfI ACATGGCTATGGATATGATGAAGAAG ACCAAGCTCTTAATATTGACAAAGAAT
47. C2At4g01900 6 0 dCAPS MseI GAGTTTTAGTGCATCGGACTGCTTTA TGGGCGCCAAAACCACGAAC
48. C2At1g72030 6 2.7 CAPS AvaII AATGTTGCTGCTGTTCAAGCTGAAGC ATCACCTGAAACTACTATATAACCTGCAT
49. C2At2g39690 6 8.8 dCAPS SspI TGGTCTTGAATATCCAGAACCTAATG CTCTGTCTGTTAAATTTGACGAAAAT
50. C2At3g25120 6 36.8 CAPS HinfI CCTTCCTCGGATCGAAAACATT AGCACTTGGATAGGCGACCATTC
51. C2At2g30100 6 41.2 PCR NA CAAACTATTTCAGATTTACACTTAAATG ACCGTTCAAGTTGGCTCTTCACAACAG
52. C2At3g46780 6 46.7 CAPS ApoI TGGAGTTTCTGACCTTGGTGCTGC TCTGCATCTTGAAATGATGATGCAAC
53. C2At2g29630 6 47.6 CAPS TaqI TCTGAGACCTGGTTCAATTTATGATGC TGGTACGTGTCCAGGCCCTTCATTC
54. C2At3g56130 6 48.5 dCAPS CfoI CTATCTTGTGTATGCCTTGTGAGCAG AGAGGATTTTCAAGACTTCTCCAGCC
55. C2At3g56040 6 49.5 CAPS AccI TCGCTATTGGATATAATGCGTAATGC AACTCAGCAACCTCTATTAGCAACTC
56. C2At1g06110 6 55.9 CAPS EcoRV TTGACTTATCTTCTCCAATTGACCC AGAGAACCCTAGTAGGTAGAGGCAG
57. C2At1g44760 6 62.2 CAPS EcoRI TTCTTCATCTGCTGCTCATCTTGC AGAGGGTTTTTTCTGACCCAAGAC
58. C2At1g03150 6 80.6 dCAPS AluI TGCCAGTTTCCTGCCGGATTA AACAATCAACATTACAAATCATATTAGC
59. C2At1g79810 6 90.4 CAPS BanII ATATGAACCAGAACTTGATGCTTTTC ACGAGCCCATATATATTGACCACCAAC
60. C2At1g73885 6 94.4 dCAPS TaqI TGGTGCACCATCCACAAGGCCA AGAAAACAAATATAAGTTTTCCCTCGT
61. C2At5g07960 6 98.4 CAPS RsaI AAGATCTTCCTATAGATTACTCCG TGAATATAATAGCAAGCCACGAGC
62. C2At1g24360 6 103 CAPS HaeIII TCCGGTTGTTATTGTCACTGGAGC TGGAAACTTCTTCTGCCTCCTTTG
63. C2At2g43360 6 110.3 PCR NA TCGATCTCCTCTTTCATGGCG TTGAGGACAATACGAACAATCTTC
64. C2At2g27450 11 91.9 dCAPS RsaI TCAAGATGATGGACTTGATTCTCG AGAGAAAATGTTACATTTGCTAGTA
65. C2At3g44600 11 99.2 CAPS CfoI TCCTTTATACCGACTTGAAGCTATTG AGATTCTATGTTTCTTGAAAGCACAGC
66. C2At3g44890 11 102.7 CAPS SpeI ATTGGGCAAAGCTCAAATTGTGAC AGCCTCAATTTTCTCGTCTTCCATC
67. C2At5g60540 11 106.2 PCR NA TGCTGTTTTCATCCGTGCTCC AGTTAATTCGGGATGAAAAGCAG
68. C2At5g11550 11 108.2 CAPS MspI ATTGCCCCTCCTGTTTTGTACAC CACCGGATTCGGAACAAGTGAATG
69. C2At2g28250 11 110.2 CAPS HinfI AGACTTCATCATCGTCATGTGGTTCCG TTTGGAGGTGCTTTGCCATACCAAG
70. C2At4g22260 12 0 CAPS ScrFI TCCTCTAACGGTCTAGAGAAATGGG AGGAACTCTTGCAATTGTTTCCAGAAC
71. C2At1g79260 12 1.7 dCAPS CfoI CCATCATGTTATCAGATTTTTAGATGC CTTCATGAATGCACCCATAAAATAAG
72. C2At3g52640 12 3.3 CAPS CfoI TACCTTGGCAGTAGAAGATTTCTTCTTG AACCCTTTCCAACTGATCCAATTTC
73. C2At5g16630 12 7.5 CAPS SspI TAAATGCAATCACTGATGGAGAGCA TGCCAATACTGCATCCCACCAAAT
74. C2At5g16710 12 12.7 PCR NA TGATGAGCTGACAGCTTTCAATGAT AGTGAATCTGGAATAGACCAATTCTTAT
75. T0408 12 17.9 CAPS NsiI GCTGCTGGACTCACAGTTGA TTCTCGGCACCCATTCTAAC
76. C2At3g60830 12 27.4 CAPS DpnII ATGCTGGTTCTAAATTTCTCAAAGC ATATGCGTCCAACTGCATAAAGCG
77. C2At3g54840 12 28.9 dCAPS SspI CATGTTCTTATATCATGTAACGTTTAA TGTGCTTTGGCAAAAGACTCAGGAC
78. C2At2g28600 12 36.4 dCAPS HinfI AGCGATGATTCCATTCAGAGAAGG TTCACGACAATTATTTTCTTTATTGA
79. C2At4g15010 12 40.8 CAPS DpnII ACATCCCAATTTGGTTACTGCCCTG AGGGGACAATGGACCAACTTCTTCATC
80 C2At5g64730 12 45.6 PCR NA GATCGACAAGTATTTTATTGGGATGT GTAGTCGTCGTTGATTGAGGCATAAT
81. C2At5g09880 12 50.4 CAPS MseI AAAACATGTTTGATCCTGCAACTGAG CCTTTGAACTTGGCATCATATTCAT
82. C2At3g24490 12 52.4 CAPS Hpy188I AGGAGAAGATGAAGTTTGCAGAGACTG ATTCTTGCAATTTCTGCCTGAGC
83. C2At4g39660 12 56.5 CAPS SspI ACAGGGAGCCACTACTGGGGTTT ACATAACCAACAAATAAGGTGCACG
84. C2At4g39870 12 56.5 CAPS TaqI AGACTTAACCAATGCTTCTGTTGGC AACTAGCCCACCAAACACAGCACC
85. C2At1g79790 12 57.3 CAPS ApoI ATATTCCTACCTTGAAGGTGTTGAAG AGAGTTTTAGCTCGTCCTCAATCATC
86. C2At1g65230 12 57.3 dCAPS HindIII TTACAGGACGAGACAAGTACAAGAGACC TTATAATTTGAAAACAGGGTAAAAAGC
*

Source: Wu et al., 2009.