Table 2.
Primers used in this study
oePCR, overlap extension PCR.
Name | Sequence | Restriction site | Purpose |
---|---|---|---|
PfA506-4424-F1-MR | ATAGCCGGATCCTAGACAGGTAGCGCCAAATCACG | BamHI | Forward primer for ptaA left flanking region |
PfA506-4424-R1-MR | AGGAGTAGTCACCATGGTGCGTGTCACGCAGGTGGTCTGATCAGGCGGCGCTATAGCTG | Reverse primer for ptaA left flanking region | |
PfA506-4424-F2-MR | GACACGCACCATGGTGACTACTCCTTG | Forward primer for ptaA right flanking region | |
PfA506-4424-R2-MR | GGCCGCGAATTCTTTGTACAGATTCTTGATTTCCATCTTG | EcoRI | Reverse primer for ptaA right flanking region |
PfA506-4424-DF-MR | TTTGAGTGCTGCGCCTATTG | ptaA genomic deletion control primer | |
PfA506-4424-DR-MR | CGCGGCAATGCTGGTGAAGATATAG | ptaA genomic deletion control primer | |
PfA506-4424-F-MR | TCATCGCATATGGTGCGTGTCAGTCGTCGATCC | NdeI | Forward primer for cloning PtaA-coding region into pEXH5 |
PfA506-4424-strep-R-MR | GGCCGCAAGCTTTTACTTTTCGAACTGCGGGTGGCTCCAGACCACCTGCGTCGCAAAGGCCTCGC | HindIII | Reverse primer for cloning PtaA-coding region into pEXH5 |
PfA506-4424_K224A-F-MR | CTGGTGCTGCGCACCTTCTCCGCCATCTAC | Primer for K224A exchange by oePCR | |
PfA506-4424_K224A-R-MR | CCGGCCATGCCGTAGATGGCGGAGAAGGTG | Primer for K224A exchange by oePCR | |
PfA506-mat4424-F-MR | GATATACATATGAGCCCAGCGCCGACAAAATCTGACC | NdeI | Forward primer for cloning mature PtaA-coding region into pEXH5 |
pEXH5-RBS-F-MR | GGCGCGGGATCCGTTTAACTTTAAGAAGGAGATATAC | BamHI | Forward primer for subcloning from pEXH5 into pME6010 |
pEXH5-strep-term-HindIII-R-MR | CCCCTTAAGCTTAAAAAAAACCCCGCCCTGTCAGGGGCGGGGTTTTTTTTTTTACTTTTCGAACTGCGGGTGGCTCC | HindIII | Reverse primer for subcloning from pEXH5 into pME6010 |