Fig. 3.

The DEGs were screened by Noiseq, DESeq2 and edgeR. a HRK48/HRK0_UP In total, 894, 900 and 1050 up-regulated DEGs were identified by Noiseq, DESeq2 and edgeR, respectively. 460 DEGs were identified under the three methods, 62 DEGs were identified under both Noiseq and edgeR, 388 DEGs were identified under both DESeq2 and edgeR, 10 DEGs were identified under both Noiseq and DESeq2. b HRK48/HRK0_DOWN In total, 170, 991 and 1028 down-regulated DEGs were identified by Noiseq, DESeq2 and edgeR, respectively. 85 DEGs were identified under the three methods, 12 DEGs were identified under both Noiseq and edgeR, 771 DEGs were identified under both DESeq2 and edgeR, 1 DEGs were identified under both Noiseq and DESeq2. c HSK48/HSK0_UP In total, 495, 595 and 448 up-regulated DEGs were identified by Noiseq, DESeq2 and edgeR, respectively. 210 DEGs were identified under the three methods, 29 DEGs were identified under both Noiseq and edgeR, 196 DEGs were identified under both DESeq2 and edgeR, 15 DEGs were identified under both Noiseq and DESeq2. d HSK48/HSK0_DOWN In total, 185, 434 and 183 down-regulated DEGs were identified by Noiseq, DESeq2 and edgeR, respectively. 47 DEGs were identified under the three methods, 9 DEGs were identified under both Noiseq and edgeR, 122 DEGs were identified under both DESeq2 and edgeR, 2 DEGs were identified under both Noiseq and DESeq2. e HRK0/HSK0_UP In total, 192, 264 and 147 up-regulated DEGs were identified by Noiseq, DESeq2 and edgeR, respectively. 84 DEGs were identified under both Noiseq and DESeq2. f HRK0/HSK0_DOWN In total, 413, 241 and 116 down-regulated DEGs were identified by Noiseq, DESeq2 and edgeR, respectively. 120 DEGs were identified under both Noiseq and DESeq2. g HRK48/HSK48_UP In total, 202, 100 and 146 up-regulated DEGs were identified by Noiseq, DESeq2 and edgeR, respectively. 56 DEGs were identified under both Noiseq and DESeq2. h HRK48/HSK48_DOWN In total, 266, 131 and 121 down-regulated DEGs were identified by Noiseq, DESeq2 and edgeR, respectively. 74 DEGs were identified under both Noiseq and DESeq2