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Acta Crystallographica Section E: Crystallographic Communications logoLink to Acta Crystallographica Section E: Crystallographic Communications
. 2017 Oct 13;73(Pt 11):1647–1651. doi: 10.1107/S2056989017014530

Green synthesis and crystal structure of 3-(benzo­thia­zol-2-yl)thio­phene

Linh Nguyen Ngoc a, Trung Vu Quoc a, Hoan Duong Quoc a, Manh Vu Quoc a,b, Luong Truong Minh a, Chien Thang Pham c, Luc Van Meervelt d,*
PMCID: PMC5683482  PMID: 29152342

A solvent-free microwave-assisted synthesis of the title compound is presented together with its crystal structure which is characterized by the herringbone motif in the packing.

Keywords: crystal structure, thio­phene, benzo­thia­zole, microwave-assisted synthesis, solvent-free, whole-mol­ecule disorder

Abstract

The title compound, C11H7NS2, was prepared in high yield (87%) using a solvent-free microwave-assisted synthesis. The structure shows whole-mol­ecule disorder with occupancies for two orientations (A and B) of 0.4884 (10) and 0.5116 (10), respectively. The thio­phene and benzo­thia­zole rings are almost planar and make dihedral angles of 10.02 (18) and 12.54 (19)° for orientations A and B, respectively. Slipped π–π stacking between the aromatic rings, together with C—H⋯π, C—H⋯S and C—H⋯N inter­actions, result in a herringbone motif in the crystal packing.

Chemical context  

Thio­phene-containing heterocycles have many applications in pharmacology, such as anti-inflammatory and analgesic agents (Issa et al., 2009), electrochromic and electronic devices (Elbing et al., 2008), and polyelectrolytes-based water-soluble sensing agents for the detection of DNA, proteins and small bioanalytes (Ho et al., 2008; Feng et al., 2008). Benzo­thia­zole-based compounds have attracted much attention in recent times due to their wide-ranging biological activities, such as anti­cancer, anti­fungal and anti­bacterial activities (Aiello et al., 2008; Cho et al., 2008). In addition, some other 2-amino­benzo­thia­zole derivatives showed anti­bacterial, anti-inflammatory and analgesic properties (Bhoi et al., 2014). A novel poly 3-(benzo­thia­zol-2-yl)thio­phene-based conductive poly­mer has been synthesized by chemical and electrochemical polymerization (Radhakrishnan et al., 2006; Radhakrishnan & Somanathan, 2006). These polymers were studied for their photoabsorption and photoluminescence characteristics and were investigated in polymeric light-emitting diodes. Some synthetic methods developed for preparing 3-(benzo­thia­zol-2-yl)thio­phene are available using a mixture of thio­phene-3-carbaldehyde and o-amino­thio­phenol refluxed in ethanol (Esashika et al., 2009) or a mixture of 3-bromo­thio­phene, magnesium turnings and 2-chloro­benzo­thia­zole (Radhakrishnan et al., 2003). 2-Substituted benzo­thia­zoles have been synthesized through condensation of bis­(2-amino­phen­yl) di­sulfides with aryl­aldehydes catalyzed by NaSH under microwave irradiation (Liu et al., 2017). X-ray single-crystal structure determinations of two (1,3-benzo­thia­zol-2-yl)thio­phene derivatives synthesized from phenyl iso­thio­cyanate (Fun et al., 2012) and benzo­thia­zole (Cheng et al., 2016) have been reported, as well as of 4-(1,3-benzo­thia­zol-2-yl)thio­phene-2-sulfonamide complexed with cyclin-dependent kinase 5 (Malmström et al., 2012). However, 3-(benzo­thia­zol-2-yl)thio­phene itself has not been studied by crystallographic methods. In this study, we present a solvent-free microwave-assisted synthesis of 3-(benzo­thia­zol-2-yl)thio­phene, starting from thio­phene-3-carbaldehyde and o-amino­thio­phenol, together with its crystal structure determination. The reaction was performed in a short time, without solvent and catalyst, leading to a simple purification protocol and a high yield (87%).graphic file with name e-73-01647-scheme1.jpg

Structural commentary  

The title compound crystallizes in the monoclinic space group P21/c with four mol­ecules in the unit cell. The structure exhibits whole-mol­ecule disorder by a rotation of approximately 180° around an axis running close to the S and N atoms of the benzo­thia­zole ring, resulting in two orientations (A and B) of about the same shape (Fig. 1). In addition, orientations A and B both have similar occupancies of 0.4884 (10) and 0.5116 (10), respectively. All the heterocyclic rings are almost planar, with r.m.s. deviations of 0.017 (thio­phene ring S1–C5), 0.004 (thio­phene ring S15–C19), 0.010 (benzo­thia­zole ring C6–N14) and 0.021 Å (benzo­thia­zole ring C20–N28). For orientation A, the angle between the best planes through the thio­phene and benzo­thia­zole rings is 10.02 (18)°. In orientation B, this angle is 12.54 (19)°. The relatively planar structure of the compound results in intra­molecular S⋯H contact distances shorter than the sum of the van der Waals radii of S and H (S7⋯H2 = 2.849 Å and S21⋯H16 = 2.824 Å).

Figure 1.

Figure 1

View of the asymmetric unit of the title compound, showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are shown as small circles of arbitrary radii. Orientation A of the disordered compound (occupancy factor 0.488) is shown in orange.

Supra­molecular features  

The crystal packing of the title compound shows a herringbone motif (Fig. 2). This motif is built up by slipped π–π stacking between the aromatic rings and C—H⋯π inter­actions. The shortest centroid–centroid distances (CgCg) observed in the π–π stacking for orientation B are shown in Fig. 3 and are listed in Table 1 for both orientations. The stacking mol­ecules inter­act further with neighbouring mol­ecules through C—H⋯π inter­actions (Fig. 3 and Table 2). In addition, infinite chains running in the [201] direction are formed through C—H⋯N and C—H⋯S inter­actions (Fig. 4 and Table 2). The crystal packing contains no voids. Whole-mol­ecule disorder is usually caused by a packing which is determined by van der Waals inter­actions only or by a lack of directional inter­actions in the packing. However, the crystal packing of the title compound shows several directional inter­actions, and hence the whole-mol­ecule disorder is the consequence of the very similar inter­ations with neighbouring mol­ecules for the two orientations.

Figure 2.

Figure 2

Crystal packing of the title compound shown in projection down the c axis. Orientation A of the disordered compound (occupancy factor 0.488) is shown in orange.

Figure 3.

Figure 3

Slipped π–π stacking between the aromatic rings and C—H⋯π inter­actions for orientation B. [Symmetry codes: (i) −x + 2, y + Inline graphic, −z + Inline graphic; (ii) x − 1, y, z; (iii) −x + 1, y − Inline graphic, −z + Inline graphic; (iv) x + 1, y, z.]

Table 1. Selected π–π inter­actions.

Cg1 is the centroid of the S15/C16–C19 plane, Cg2 that of the C20/S21/C22/C27/N28 plane, Cg3 that of the C22–C27 plane, Cg4 that of the S1/C2–C5 plane, Cg5 that of the C6/S7/C8/C13/N14 plane and Cg6 that of the C8–C13 plane.

CgI CgJ CgCg (Å) α (°) CgI_Perp (Å) CgJ_Perp (Å)
Cg1 Cg2i 3.888 (3) 12.0 (2) 3.761 (2) −3.7335 (17)
Cg1 Cg3i 3.962 (3) 13.0 (2) 3.774 (2) −3.614 (2)
Cg2 Cg1ii 3.888 (3) 12.0 (2) −3.7335 (17) 3.761 (2)
Cg2 Cg6ii 3.973 (3) 9.4 (2) −3.6796 (17) 3.708 (2)
Cg3 Cg1ii 3.962 (3) 13.0 (2) −3.614 (2) 3.774 (2)
Cg3 Cg6ii 3.799 (3) 10.4 (2) −3.631 (2) 3.720 (2)
Cg4 Cg5ii 3.859 (3) 9.6 (2) −3.5981 (19) 3.7215 (17)
Cg4 Cg6ii 3.882 (3) 10.4 (2) −3.5850 (19) 3.674 (2)
Cg5 Cg4i 3.859 (3) 9.6 (2) 3.7215 (17) −3.5981 (19)
Cg6 Cg2i 3.972 (3) 9.4 (2) 3.708 (2) −3.6796 (17)
Cg6 Cg3i 3.798 (3) 10.4 (2) 3.719 (2) −3.631 (2)
Cg6 Cg4i 3.882 (3) 10.4 (2) 3.673 (2) −3.5851 (19)

Notes: CgI(J) = plane number I(J); CgCg = distance between ring centroids; CgI_Perp = perpendicular distance of CgI on ring J; CgJ_Perp = perpendicular distance of CgJ on ring I. Symmetry codes: (i) x + 1, y, z; (ii) x − 1, y, z.

Table 2. Hydrogen-bond geometry (Å, °).

Cg1 is the centroid of the S15/C16–C19 plane, Cg3 that of the C22–C27 plane, Cg4 that of the S1/C2–C5 plane and Cg6 that of the C8–C13 plane.

D—H⋯A D—H H⋯A DA D—H⋯A
C9—H9⋯N14i 0.95 2.54 3.355 (6) 144
C26—H26⋯S15ii 0.95 2.87 3.522 (5) 126
C5—H5⋯Cg1iii 0.95 2.86 3.496 (5) 125
C5—H5⋯Cg6iii 0.95 2.93 3.532 (5) 123
C11—H11⋯Cg3iv 0.95 2.90 3.670 (6) 139
C11—H11⋯Cg4iv 0.95 2.90 3.705 (6) 143
C19—H19⋯Cg3iv 0.95 2.74 3.418 (6) 129
C19—H19⋯Cg4iv 0.95 2.73 3.447 (6) 133

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Figure 4.

Figure 4

Infinite chain formation through C—H⋯N (blue dashed lines) and C—H⋯S (yellow dashed lines) interactions in the crystal packing of the title compound. Orientation A of the disordered compound (occupancy factor 0.488) is shown in orange. [Symmetry codes: (i) x − 1, −y + Inline graphic, z + Inline graphic; (ii) x, −y + Inline graphic, z + Inline graphic; (iii) x + 1, −y + Inline graphic, z − Inline graphic; (iv) x, −y + Inline graphic, z − Inline graphic.]

Additional insight into the inter­molecular inter­actions was obtained from an analysis of the Hirshfield surface and two-dimensional fingerprint plots using CrystalExplorer (McKinnon et al., 2007; Spackman & Jayatilaka, 2009). Fig. 5 illustrates the Hirshfeld surfaces mapped over d norm for both orientations. The bright-red spots near atoms H9 and N14 for orientation A and near atoms H26 and S15 for orientation B are indicative for the hydrogen bonds given in Table 2. For orientation A, the red spots near atoms S1 and C12 refer to short C⋯S/S⋯C contacts and in the case of S1 also S⋯S contacts. The red spots for orientation B near atoms N28 and H16 characterize short N⋯H/H⋯N contacts, and near atoms H19 and C24 indicate short H⋯C/C⋯H contacts. The relative distributions from the different inter­atomic contacts to the Hirshfeld surfaces are summarized in Table 3. The largest contributions are contacts in which H atoms are involved. The largest differences between both orientations are observed for H⋯S/S⋯H (9.5%), H⋯H (5.7%), S⋯S (3.3%) and C⋯S/S⋯C (3.1%) contacts, and are caused by the presence of the C26—H26⋯S15ii hydrogen bond in orientation B.

Figure 5.

Figure 5

Two views of the Hirshfeld surfaces mapped over d norm for (a) orientation A in the range −0.151 to 1.099 a.u. and (b) orientation B in the range −0.134 to 0.936 a.u.

Table 3. Percentage contributions of inter­atomic contacts to the Hirshfeld surfaces.

Contact Orientation A Orientation B
H⋯H 35.8 30.1
S⋯H/H⋯S 15.9 25.4
C⋯H/H⋯C 20.2 21.8
N⋯H/H⋯N 6.4 7.7
C⋯C 8.0 8.9
C⋯S/S⋯C 6.1 3.0
S⋯S 4.2 0.9
S⋯N/N⋯S 2.3 1.1
C⋯N/N⋯C 1.0 1.1

Database survey  

A search of the Cambridge Structral Database (CSD, Version 3.38, last update May 2017; Groom et al., 2016) for 3-(benzo­thia­zol-2-yl)thio­phene derivatives gives two hits: 2-anilino-4-(1,3-benzo­thia­zol-2-yl)-5-(4-chloro­benzo­yl)thio­phene-3-carbo­nitrile (refcode LEGHOW; Fun et al., 2012) and 3-(1,3-benzo­thia­zol-2-yl)-N-(quinolin-8-yl)thio­phene-2-carboxamide (refcode UVUGOJ; Cheng et al., 2016). The substitution of the thio­phene ring in these two compounds has an influence on the angle between the best planes through the thio­phene and benzo­thia­zole rings. In the monosubstituted derivative UVUGOJ, an intra­molecular N—H⋯S hydrogen bond lowers the angle to 5.95°. For the tris­ubstituted derivative LEGHOW, the angle increases to 46.77°.

Synthesis and crystallization  

The reaction scheme to synthesize the title compound is given in Fig. 6. The reaction mechanism is similar to that described by Mukhopadhyay & Datta (2007) for the synthesis of 2-aryl­benzo­thia­zoles.

Figure 6.

Figure 6

Reaction scheme for the title compound.

A reaction mixture of thio­phene-3-carbaldehyde (2 mmol) and o-amino­thio­phenol (2 mmol) was heated for 4 min in a domestic microwave (Sanyo EM-S1065, 800 W) at medium power level (400 W). The progress of the reaction was monitored with thin-layer chromatography (TLC) every minute. The mixture was cooled to room temperature and then dissolved in an n-hexa­ne–ethyl acetate mixture (5:1 v/v) to obtain a solid product, which was further crystallized in the same solvent to give 0.38 g (yield 87%) of the title product as pale-yellow crystals (m.p. 386 K). IR (Nicolet Impact 410 FT–IR, KBr, cm−1): 3067 (νCH), 1581 (νC=C), 1634 (νC=N). 1H NMR [Bruker XL-500, 500 MHz, d 6-DMSO, δ (ppm), J (Hz)]: 8.36 (dd, 1H, 4 J = 1.0, 5 J = 2.5, H2), 7.72 (dd, 1H, 2 J = 1.0, 5 J = 5.0, H4), 7.77 (dd, 1H, 2 J = 2.5, 4 J = 5.0, H5), 8.02 (dd, 1H, 11 J = 1.0, 10 J = 8.0, H9), 7.52 (td, 1H, 12 J = 1.0, 11 J = 7.5, 9 J = 8.0, H10), 7.44 (td, 1H, 9 J = 1.0, 10 J = 7.5, 12 J = 8.0, H11), 8.11 (dd, 1H, 10 J = 1.0, 11 J = 8.0, H12). 13C NMR [Bruker XL-500, 125 MHz, d 6-DMSO, δ (ppm)]: 127.54 (C2), 135.17 (C3),126.17 (C4), 128.38 (C5), 162.17 (C6), 134.17 (C7), 153.30 (C8), 122.57 (C9), 126.53 (C10), 125.30 (C11), 122.22 (C12). Calculation for C11H7NS2: M = 217 a.u.

Refinement  

Crystal data, data collection and structure refinement details are summarized in Table 4. The mol­ecule is disordered over two positions (A and B) by a rotation of approximately 180°. The final occupancy factors are 0.4884 (10) for mol­ecule A and 0.5116 (10) for mol­ecule B. Enhanced rigid-body restraints (RIGU) were applied for all atoms. The H atoms were placed in idealized positions and refined in riding mode, with U iso(H) values assigned as 1.2U eq of the parent atoms, with a C—H distance of 0.95 Å. In the final cycles of refinement, 17 outliers were omitted.

Table 4. Experimental details.

Crystal data
Chemical formula C11H7NS2
M r 217.30
Crystal system, space group Monoclinic, P21/c
Temperature (K) 100
a, b, c (Å) 6.1368 (4), 13.9799 (9), 11.4609 (7)
β (°) 100.193 (2)
V3) 967.73 (11)
Z 4
Radiation type Mo Kα
μ (mm−1) 0.50
Crystal size (mm) 0.44 × 0.36 × 0.31
 
Data collection
Diffractometer Bruker APEXII CCD
Absorption correction Multi-scan (SADABS; Bruker, 2014)
T min, T max 0.703, 0.747
No. of measured, independent and observed [I > 2σ(I)] reflections 19256, 2385, 2255
R int 0.034
(sin θ/λ)max−1) 0.667
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.076, 0.172, 1.22
No. of reflections 2385
No. of parameters 254
No. of restraints 228
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.61, −0.52

Computer programs: APEX2 (Bruker, 2014), SAINT (Bruker, 2013), SHELXT2016 (Sheldrick, 2015a ), SHELXL2014 (Sheldrick, 2015b ) and OLEX2 (Dolomanov et al., 2009).

Supplementary Material

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989017014530/tx2001sup1.cif

e-73-01647-sup1.cif (430.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989017014530/tx2001Isup2.hkl

e-73-01647-Isup2.hkl (131.2KB, hkl)

CCDC reference: 1578811

Additional supporting information: crystallographic information; 3D view; checkCIF report

supplementary crystallographic information

Crystal data

C11H7NS2 F(000) = 448
Mr = 217.30 Dx = 1.491 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
a = 6.1368 (4) Å Cell parameters from 9904 reflections
b = 13.9799 (9) Å θ = 2.9–32.6°
c = 11.4609 (7) Å µ = 0.50 mm1
β = 100.193 (2)° T = 100 K
V = 967.73 (11) Å3 Block, colorless
Z = 4 0.44 × 0.36 × 0.31 mm

Data collection

Bruker APEXII CCD diffractometer 2255 reflections with I > 2σ(I)
φ and ω scans Rint = 0.034
Absorption correction: multi-scan (SADABS; Bruker, 2014) θmax = 28.3°, θmin = 2.9°
Tmin = 0.703, Tmax = 0.747 h = −8→8
19256 measured reflections k = −18→18
2385 independent reflections l = −15→15

Refinement

Refinement on F2 228 restraints
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.076 H-atom parameters constrained
wR(F2) = 0.172 w = 1/[σ2(Fo2) + (0.0293P)2 + 2.8579P] where P = (Fo2 + 2Fc2)/3
S = 1.22 (Δ/σ)max = 0.001
2385 reflections Δρmax = 0.61 e Å3
254 parameters Δρmin = −0.52 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
S1 0.1359 (2) 0.50570 (11) 0.64696 (12) 0.0370 (3) 0.4884 (10)
C2 0.3260 (9) 0.5734 (4) 0.5993 (4) 0.0304 (8) 0.4884 (10)
H2 0.332074 0.581845 0.517697 0.036* 0.4884 (10)
C3 0.4732 (7) 0.6159 (3) 0.6887 (4) 0.0208 (6) 0.4884 (10)
C4 0.4069 (8) 0.5922 (3) 0.8006 (4) 0.0242 (7) 0.4884 (10)
H4 0.478997 0.617848 0.874094 0.029* 0.4884 (10)
C5 0.2230 (7) 0.5268 (3) 0.7915 (4) 0.0218 (7) 0.4884 (10)
H5 0.162696 0.500659 0.855346 0.026* 0.4884 (10)
C6 0.6552 (7) 0.6774 (3) 0.6747 (4) 0.0202 (6) 0.4884 (10)
S7 0.68433 (19) 0.71644 (9) 0.53194 (10) 0.0230 (2) 0.4884 (10)
C8 0.9176 (7) 0.7805 (3) 0.5945 (3) 0.0188 (6) 0.4884 (10)
C9 1.0540 (8) 0.8389 (4) 0.5407 (4) 0.0256 (7) 0.4884 (10)
H9 1.026389 0.849650 0.457569 0.031* 0.4884 (10)
C10 1.2293 (8) 0.8799 (4) 0.6130 (4) 0.0294 (8) 0.4884 (10)
H10 1.325861 0.919477 0.577890 0.035* 0.4884 (10)
C11 1.2752 (8) 0.8670 (4) 0.7362 (4) 0.0267 (8) 0.4884 (10)
H11 1.398885 0.897336 0.783337 0.032* 0.4884 (10)
C12 1.1363 (8) 0.8092 (4) 0.7873 (4) 0.0246 (7) 0.4884 (10)
H12 1.163974 0.799310 0.870616 0.029* 0.4884 (10)
C13 0.9581 (7) 0.7659 (3) 0.7183 (4) 0.0196 (6) 0.4884 (10)
N14 0.8042 (6) 0.7076 (3) 0.7618 (3) 0.0213 (6) 0.4884 (10)
S15 1.2597 (2) 0.90620 (10) 0.59226 (10) 0.0325 (3) 0.5116 (10)
C16 1.0318 (8) 0.8344 (4) 0.5615 (4) 0.0260 (8) 0.5116 (10)
H16 0.946788 0.825702 0.484562 0.031* 0.5116 (10)
C17 0.9864 (6) 0.7905 (3) 0.6624 (3) 0.0204 (6) 0.5116 (10)
C18 1.1510 (8) 0.8185 (3) 0.7658 (4) 0.0247 (7) 0.5116 (10)
H18 1.149066 0.795829 0.843803 0.030* 0.5116 (10)
C19 1.3063 (8) 0.8798 (4) 0.7391 (4) 0.0255 (8) 0.5116 (10)
H19 1.425444 0.904712 0.795189 0.031* 0.5116 (10)
C20 0.8024 (7) 0.7272 (3) 0.6680 (4) 0.0216 (6) 0.5116 (10)
S21 0.6485 (2) 0.68370 (9) 0.53382 (10) 0.0282 (3) 0.5116 (10)
C22 0.4817 (7) 0.6220 (3) 0.6160 (4) 0.0255 (6) 0.5116 (10)
C23 0.3070 (8) 0.5607 (4) 0.5775 (5) 0.0319 (8) 0.5116 (10)
H23 0.260774 0.544164 0.496484 0.038* 0.5116 (10)
C24 0.2039 (10) 0.5250 (4) 0.6684 (5) 0.0466 (10) 0.5116 (10)
H24 0.078484 0.485473 0.643384 0.056* 0.5116 (10)
C25 0.2579 (7) 0.5390 (3) 0.7860 (5) 0.0269 (7) 0.5116 (10)
H25 0.175882 0.512781 0.841294 0.032* 0.5116 (10)
C26 0.4498 (7) 0.5970 (4) 0.8198 (4) 0.0276 (7) 0.5116 (10)
H26 0.506396 0.606303 0.901659 0.033* 0.5116 (10)
C27 0.5547 (7) 0.6395 (3) 0.7374 (4) 0.0227 (6) 0.5116 (10)
N28 0.7402 (6) 0.6993 (3) 0.7626 (3) 0.0235 (6) 0.5116 (10)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0362 (6) 0.0388 (7) 0.0338 (6) −0.0082 (5) 0.0007 (5) 0.0022 (5)
C2 0.0364 (15) 0.0304 (19) 0.0229 (11) −0.0075 (11) 0.0016 (10) −0.0026 (12)
C3 0.0204 (10) 0.0211 (14) 0.0209 (10) 0.0033 (8) 0.0036 (8) −0.0010 (10)
C4 0.0273 (13) 0.0233 (16) 0.0227 (10) 0.0023 (10) 0.0062 (9) −0.0004 (11)
C5 0.0224 (13) 0.0164 (15) 0.0276 (11) 0.0063 (10) 0.0069 (11) −0.0006 (12)
C6 0.0221 (10) 0.0205 (14) 0.0180 (10) 0.0019 (8) 0.0038 (8) −0.0019 (10)
S7 0.0251 (5) 0.0246 (5) 0.0180 (4) −0.0042 (4) 0.0004 (4) 0.0005 (4)
C8 0.0206 (11) 0.0185 (14) 0.0172 (9) 0.0014 (8) 0.0033 (8) −0.0023 (9)
C9 0.0310 (13) 0.0225 (16) 0.0257 (12) −0.0041 (10) 0.0115 (9) −0.0031 (11)
C10 0.0341 (15) 0.0267 (19) 0.0296 (10) −0.0065 (12) 0.0116 (10) −0.0033 (12)
C11 0.0245 (14) 0.0281 (18) 0.0286 (10) −0.0022 (11) 0.0076 (10) −0.0038 (12)
C12 0.0242 (12) 0.0293 (16) 0.0205 (12) −0.0030 (9) 0.0048 (9) −0.0046 (11)
C13 0.0221 (10) 0.0188 (14) 0.0178 (9) 0.0022 (8) 0.0029 (8) −0.0004 (9)
N14 0.0224 (10) 0.0225 (14) 0.0185 (10) 0.0005 (9) 0.0020 (8) 0.0000 (10)
S15 0.0324 (5) 0.0418 (6) 0.0241 (4) −0.0105 (5) 0.0072 (4) −0.0022 (5)
C16 0.0259 (14) 0.0317 (17) 0.0198 (10) −0.0032 (11) 0.0026 (10) −0.0032 (11)
C17 0.0209 (10) 0.0203 (13) 0.0200 (10) 0.0019 (8) 0.0037 (8) −0.0057 (9)
C18 0.0268 (12) 0.0271 (16) 0.0198 (11) −0.0038 (10) 0.0030 (9) −0.0034 (11)
C19 0.0267 (13) 0.0279 (16) 0.0215 (11) −0.0044 (10) 0.0033 (11) −0.0019 (12)
C20 0.0200 (10) 0.0206 (13) 0.0233 (10) 0.0012 (8) 0.0009 (8) −0.0030 (9)
S21 0.0306 (5) 0.0311 (6) 0.0203 (4) −0.0078 (4) −0.0028 (4) 0.0016 (4)
C22 0.0258 (12) 0.0208 (14) 0.0279 (10) −0.0029 (9) −0.0006 (9) −0.0009 (10)
C23 0.0302 (14) 0.0231 (16) 0.0374 (13) −0.0065 (10) −0.0075 (10) 0.0021 (12)
C24 0.0482 (19) 0.044 (2) 0.0448 (11) −0.0254 (15) 0.0000 (10) −0.0028 (12)
C25 0.0213 (13) 0.0174 (16) 0.0412 (11) 0.0018 (10) 0.0029 (11) 0.0000 (13)
C26 0.0242 (12) 0.0260 (16) 0.0327 (12) −0.0040 (10) 0.0054 (9) −0.0013 (11)
C27 0.0204 (11) 0.0207 (14) 0.0261 (9) 0.0013 (8) 0.0017 (8) −0.0018 (9)
N28 0.0234 (11) 0.0225 (13) 0.0242 (9) −0.0012 (9) 0.0032 (8) −0.0032 (9)

Geometric parameters (Å, º)

S1a—C2 1.667 (6) S15b—C16 1.707 (5)
C2a—H2 0.9500 C16b—H16 0.9500
C2a—C3 1.375 (6) C16b—C17 1.380 (6)
C3a—C4 1.449 (6) C17b—C18 1.468 (6)
C4a—H4 0.9500 C18b—H18 0.9500
S1a—C5 1.674 (5) S15b—C19 1.697 (5)
C4a—C5 1.442 (7) C18b—C19 1.357 (7)
C5a—H5 0.9500 C19b—H19 0.9500
C3a—C6 1.442 (6) C17b—C20 1.444 (6)
C6a—S7 1.763 (4) C20b—S21 1.764 (4)
S7a—C8 1.733 (4) S21b—C22 1.738 (5)
C8a—C9 1.389 (6) C22b—C23 1.383 (6)
C9a—H9 0.9500 C23b—H23 0.9500
C9a—C10 1.363 (7) C23b—C24 1.403 (8)
C10a—H10 0.9500 C24b—H24 0.9500
C10a—C11 1.402 (7) C24b—C25 1.344 (8)
C11a—H11 0.9500 C25b—H25 0.9500
C11a—C12 1.378 (7) C25b—C26 1.426 (6)
C12a—H12 0.9500 C26b—H26 0.9500
C12a—C13 1.372 (6) C26b—C27 1.369 (7)
C8a—C13 1.411 (5) C22b—C27 1.406 (6)
C6a—N14 1.299 (5) C20b—N28 1.273 (6)
C13a—N14 1.404 (6) C27b—N28 1.401 (5)
C3a—C2a—S1 114.0 (4) C18b—C19b—S15 111.1 (3)
C4a—C5a—S1 107.0 (3) C17b—C16b—S15 111.6 (3)
C3a—C2a—H2 123.0 C19b—S15b—C16 93.7 (2)
S1a—C2a—H2 123.0 C17b—C16b—H16 124.2
N14a—C6a—C3 124.2 (4) S15b—C16b—H16 124.2
C5a—C4a—C3 114.8 (4) N28b—C20b—C17 125.4 (4)
C2a—C3a—C4 108.1 (4) C19b—C18b—C17 113.4 (4)
C6a—C3a—C4 125.4 (4) C20b—C17b—C18 124.0 (4)
C5a—C4a—H4 122.6 C16b—C17b—C18 110.2 (4)
C3a—C4a—H4 122.6 C19b—C18b—H18 123.3
C2a—S1a—C5 96.0 (2) C17b—C18b—H18 123.3
C4a—C5a—H5 126.5 S15b—C19b—H19 124.5
S1a—C5a—H5 126.5 C18b—C19b—H19 124.5
C2a—C3a—C6 126.4 (4) C16b—C17b—C20 125.8 (4)
C8a—S7a—C6 89.31 (19) C22b—S21b—C20 88.5 (2)
C3a—C6a—S7 119.8 (3) C17b—C20b—S21 118.4 (3)
N14a—C6a—S7 116.1 (3) N28b—C20b—S21 116.2 (3)
C9a—C8a—S7 129.7 (3) C23b—C22b—S21 129.2 (4)
C13a—C8a—S7 109.1 (3) C27b—C22b—S21 109.6 (3)
C10a—C9a—C8 116.8 (4) C26b—C27b—C22 120.0 (4)
N14a—C13a—C8 115.5 (4) N28b—C27b—C22 114.4 (4)
C12a—C13a—C8 119.7 (4) C25b—C24b—C23 129.0 (5)
C8a—C9a—H9 121.6 C24b—C23b—H23 122.9
C10a—C9a—H9 121.6 C22b—C23b—H23 122.9
C12a—C11a—C10 118.3 (4) C22b—C23b—C24 114.1 (5)
C11a—C10a—H10 118.2 C23b—C24b—H24 115.5
C9a—C10a—H10 118.2 C25b—C24b—H24 115.5
C9a—C10a—C11 123.6 (5) C27b—C26b—C25 121.7 (4)
C13a—C12a—C11 120.3 (4) C26b—C25b—H25 123.2
C12a—C11a—H11 120.8 C24b—C25b—H25 123.2
C10a—C11a—H11 120.8 C24b—C25b—C26 113.6 (5)
C11a—C12a—H12 119.9 C25b—C26b—H26 119.1
C13a—C12a—H12 119.9 C27b—C26b—H26 119.1
C9a—C8a—C13 121.2 (4) C20b—N28b—C27 111.3 (4)
C6a—N14a—C13 110.0 (4) C23b—C22b—C27 121.1 (4)
C12a—C13a—N14 124.7 (4) C26b—C27b—N28 125.6 (4)
C5a—S1a—C2a—C3a 1.2 (4) C19b—S15b—C16b—C17b 0.8 (4)
S1a—C2a—C3a—C6a 179.5 (4) S15b—C16b—C17b—C20b 178.4 (3)
S1a—C2a—C3a—C4a −3.4 (5) S15b—C16b—C17b—C18b −0.7 (5)
C2a—C3a—C4a—C5a 4.7 (6) C16b—C17b—C18b—C19b 0.1 (6)
C6a—C3a—C4a—C5a −178.3 (4) C20b—C17b—C18b—C19b −178.9 (4)
C3a—C4a—C5a—S1a −3.8 (5) C17b—C18b—C19b—S15b 0.5 (5)
C2a—S1a—C5a—C4a 1.5 (4) C16b—S15b—C19b—C18b −0.7 (4)
C2a—C3a—C6a—N14a −172.3 (5) C16b—C17b—C20b—N28b −167.9 (5)
C4a—C3a—C6a—N14a 11.2 (7) C18b—C17b—C20b—N28b 11.0 (7)
C2a—C3a—C6a—S7a 8.0 (6) C16b—C17b—C20b—S21b 12.2 (6)
C4a—C3a—C6a—S7a −168.5 (4) C18b—C17b—C20b—S21b −168.9 (3)
N14a—C6a—S7a—C8a −0.5 (4) N28b—C20b—S21b—C22b 0.4 (4)
C3a—C6a—S7a—C8a 179.2 (4) C17b—C20b—S21b—C22b −179.7 (3)
C6a—S7a—C8a—C9a −178.7 (4) C20b—S21b—C22b—C23b −177.2 (5)
C6a—S7a—C8a—C13a 1.2 (3) C20b—S21b—C22b—C27b 0.3 (3)
C13a—C8a—C9a—C10a 0.8 (7) C27b—C22b—C23b—C24b 4.4 (7)
S7a—C8a—C9a—C10a −179.3 (4) S21b—C22b—C23b—C24b −178.3 (4)
C8a—C9a—C10a—C11a −0.8 (8) C22b—C23b—C24b—C25b −3.2 (9)
C9a—C10a—C11a—C12a 0.4 (8) C23b—C24b—C25b—C26b −1.3 (9)
C10a—C11a—C12a—C13a 0.0 (8) C24b—C25b—C26b—C27b 4.9 (7)
C11a—C12a—C13a—N14a −178.5 (4) C25b—C26b—C27b—N28b 178.3 (4)
C11a—C12a—C13a—C8a 0.1 (7) C25b—C26b—C27b—C22b −3.8 (7)
C9a—C8a—C13a—C12a −0.5 (7) C23b—C22b—C27b—C26b −1.2 (7)
S7a—C8a—C13a—C12a 179.6 (4) S21b—C22b—C27b—C26b −179.0 (4)
C9a—C8a—C13a—N14a 178.2 (4) C23b—C22b—C27b—N28b 176.9 (4)
S7a—C8a—C13a—N14a −1.7 (5) S21b—C22b—C27b—N28b −0.9 (5)
C3a—C6a—N14a—C13a 179.9 (4) C17b—C20b—N28b—C27b 179.1 (4)
S7a—C6a—N14a—C13a −0.3 (5) S21b—C20b—N28b—C27b −1.0 (5)
C12a—C13a—N14a—C6a 180.0 (4) C26b—C27b—N28b—C20b 179.2 (4)
C8a—C13a—N14a—C6a 1.3 (5) C22b—C27b—N28b—C20b 1.2 (5)

Hydrogen-bond geometry (Å, º)

Cg1 is the centroid of the S15/C16–C19 plane, Cg3 that of the C22–C27 plane, Cg4 that of the S1/C2–C5 plane and Cg6 that of the C8–C13 plane.

D—H···A D—H H···A D···A D—H···A
C9—H9···N14i 0.95 2.54 3.355 (6) 144
C26—H26···S15ii 0.95 2.87 3.522 (5) 126
C5—H5···Cg1iii 0.95 2.86 3.496 (5) 125
C5—H5···Cg6iii 0.95 2.93 3.532 (5) 123
C11—H11···Cg3iv 0.95 2.90 3.670 (6) 139
C11—H11···Cg4iv 0.95 2.90 3.705 (6) 143
C19—H19···Cg3iv 0.95 2.74 3.418 (6) 129
C19—H19···Cg4iv 0.95 2.73 3.447 (6) 133

Symmetry codes: (i) x, −y+3/2, z−1/2; (ii) x−1, −y+3/2, z+1/2; (iii) −x+1, y−1/2, −z+3/2; (iv) −x+2, y+1/2, −z+3/2.

Funding Statement

This work was funded by VLIR–UOS grant ZEIN2014Z182 to LVM.

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989017014530/tx2001sup1.cif

e-73-01647-sup1.cif (430.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989017014530/tx2001Isup2.hkl

e-73-01647-Isup2.hkl (131.2KB, hkl)

CCDC reference: 1578811

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Crystallographic Communications are provided here courtesy of International Union of Crystallography

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