Table 1. Primer Sequences, PCR Product Sizes, and Annealing Temperatures Used in MSP Assays.
PCR product size (bp) | Annealing temperature (℃) | |
---|---|---|
SFRP2 | ||
M S: GGGTCGGAGTTTTTCGGAGTTGCGC | 138 | 62 |
A: CCGCTCTCTTCGCTAAATACGACTCG | ||
U S: TTTTGGGTTGGAGTTTTTTGGAGTTGTGT | 145 | 50 |
A: AACCCACTCTCTTCACTAAATACAACTCA | ||
BMP3 | ||
M S: GTTTGGAGTTTAATTTTCGGTTTC | 179 | 54 |
A: ATAACTTCGATCTCTCTCCCTACG | ||
U S: GGTTTGGAGTTTAATTTTTGGTTTT | 178 | 54 |
A: AACTTCAATCTCTCTCCCTACACC | ||
NDRG4 | ||
M S: TTTAGGTTCGGTATCGTTTCGC | 110 | 61 |
A: CGAACTAAAAACGATACGCCG | ||
U S: GATTAGTTTTAGGTTTGGTATTGTTTTGT | 105 | 61 |
A: AAAACCAAACTAAAAACAATACACCA | ||
TFPI2 | ||
M S: ATTTTTTAGGTTTCGTTTCGGC | 118 | 57 |
A: GCCTAACGAAAAAAAATACGCG | ||
U S: TTAGTTATTTTTTAGGTTTTGTTTTGGT | 105 | 57 |
A: AAAAACACCTAACAAAAAAAAATACACA |
MSP, methylation-specific PCR; SFRP2, secreted frizzled-related protein 2; M, methylated; S, sense; A, antisense; U, unmethylated; BMP3, bone morphogenetic protein 3; NDRG4, N-myc downstream-regulated gene 4; TFPI2, tissue factor pathway inhibitor 2.