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. 2017 Oct 23;15(4):495–501. doi: 10.5217/ir.2017.15.4.495

Table 1. Primer Sequences, PCR Product Sizes, and Annealing Temperatures Used in MSP Assays.

PCR product size (bp) Annealing temperature (℃)
SFRP2
 M S: GGGTCGGAGTTTTTCGGAGTTGCGC 138 62
 A: CCGCTCTCTTCGCTAAATACGACTCG
 U S: TTTTGGGTTGGAGTTTTTTGGAGTTGTGT 145 50
 A: AACCCACTCTCTTCACTAAATACAACTCA
BMP3
 M S: GTTTGGAGTTTAATTTTCGGTTTC 179 54
 A: ATAACTTCGATCTCTCTCCCTACG
 U S: GGTTTGGAGTTTAATTTTTGGTTTT 178 54
 A: AACTTCAATCTCTCTCCCTACACC
NDRG4
 M S: TTTAGGTTCGGTATCGTTTCGC 110 61
 A: CGAACTAAAAACGATACGCCG
 U S: GATTAGTTTTAGGTTTGGTATTGTTTTGT 105 61
 A: AAAACCAAACTAAAAACAATACACCA
TFPI2
 M S: ATTTTTTAGGTTTCGTTTCGGC 118 57
 A: GCCTAACGAAAAAAAATACGCG
 U S: TTAGTTATTTTTTAGGTTTTGTTTTGGT 105 57
 A: AAAAACACCTAACAAAAAAAAATACACA

MSP, methylation-specific PCR; SFRP2, secreted frizzled-related protein 2; M, methylated; S, sense; A, antisense; U, unmethylated; BMP3, bone morphogenetic protein 3; NDRG4, N-myc downstream-regulated gene 4; TFPI2, tissue factor pathway inhibitor 2.