Table 3.
List of 25 BJ04 amino acid (AA) residues that were not found in any prototype sequences.
| ORF Name | Length(AA) | AA change | Genomic positiona | Other 30 GB sequencesb | PROVEAN analysisc |
|---|---|---|---|---|---|
| Control protein E1A | 289 | A29T | 643 | 2 | NDd |
| Control protein E1B 55 K | 495 | T51A | 2157 | 5 | ND |
| DNA polymerase | 1198 | V89I | 8519 | 0 | Neutral |
| N254H | 8024 | 0 | Neutral | ||
| R274C | 7964 | 0 | Deleterious | ||
| Terminal protein precursor pTP | 671 | A64T | 10399 | 0 | Neutral |
| A283T | 9742 | 0 | Neutral | ||
| D432N | 9313 | 1 | ND | ||
| A527T | 9028 | 1 | ND | ||
| Encapsidation protein 52 K | 415 | P74S | 11259 | 0 | Neutral |
| Capsid protein precursor pIIIa | 585 | L474V | 13727 | 0 | Neutral |
| Penton base | 571 | A368T | 15266 | 3 | ND |
| Single-stranded DNA-binding protein | 529 | R67C | 23881 | 0 | Neutral |
| Hexon assembly protein 100 K | 805 | A122T | 24471 | 0 | Neutral |
| Encapsidation protein 22 K | 195 | S75N | 26462 | 0 | Neutral |
| Protein 33 K | 228 | S75N | 26462 | 0 | Neutral |
| Control protein E3 12.5 K | 107 | T50I | 28047 | 0 | Neutral |
| Membrane glycoprotein E3 gp19K | 159 | K62R | 28995 | 0 | Neutral |
| Fiber | 582 | S178T | 31561 | 5 | ND |
| Control protein E4orf6/7 | 150 | P66S | 33171 | 10 | ND |
| Q69R | 33161 | 9 | ND | ||
| Control protein E4 34 K | 294 | Y61F | 33896 | 5 | ND |
| L90I | 33810 | 0 | Neutral | ||
| Control protein E4orf4 | 114 | H38R | 34230 | 0 | Neutral |
| Control protein E4orf3 | 116 | V70I | 34499 | 0 | Neutral |
Note: aGenomic positions as well as amino changes for each ORF were indicated.
bThe number of sequences within the remaining 30 GB sequences featuring the same amino change is shown.
cThe PROVEAN prediction on the effect of amino changes only found in BJ04 is indicated.
dNot done (ND).