Table 2.
ChIP-seq analysis of the effect of Prep1 DR on Cebpβ binding to DNA in C and P cells*.
| Undifferentiated C cells (−2 days) | Undifferentiated P cells (−2 days) | Differentiated C cells (+4 hrs) | Differentiated P cells (+4 hrs) | |
|---|---|---|---|---|
| Total n. ofpeaks | 838 | 1,652 | 13,517 | 26,696 |
| TSSA# | 58 (7) | 91 (6) | 484 (4) | 989 (4) |
| IG# | 309 (37) | 652 (39) | 5,671 (42) | 11,603 (43) |
| CI# | 136 (16) | 248 (15) | 1,991 (15) | 3,600 (14) |
| FI# | 335 (40) | 661 (40) | 5,371 (39) | 10,504 (39) |
| number of hotspots overlapping with peaks$ | NA | NA | 6,074 (54) | 8294 (74) |
*The numbers refer to highly specific peaks (p < 10−5). The numbers in brackets show the percent of the peak categories versus total number of peaks.
#TSSA: transcription start site associated; IG: intragenic: CI: close intergenic (less than 20 Kb); FI: far intergenic (>20 Kb).
$hotspots’ coordinates established by4, NA - not available.