Table 6.
Joint effect of the two SNPs associated with flowering period in the whole population and of the ten most frequent genetic variants defined by the four SNPs on chromosome 3 associated with ripening period in the whole population.
| Genetic variant | Genotypes at SNPsa,b | N°cultivars | Frequency | Mean | Median | SD | Min | Max | Tukey groups |
|---|---|---|---|---|---|---|---|---|---|
| FLOWERING PERIOD | |||||||||
| Variant 1 | GG/AA | 760 | 0.67 | 4.65 | 4.73 | 0.95 | 1.73 | 8.87 | a |
| Variant 2 | GT/GA | 126 | 0.11 | 5.83 | 5.73 | 1.32 | 2.73 | 8.88 | b |
| Variant 3 | GG/GA | 121 | 0.11 | 4.43 | 4.47 | 1.13 | 1.73 | 8.24 | a |
| Variant 4 | GT/AA | 89 | 0.08 | 4.49 | 4.67 | 1.00 | 2.34 | 7.37 | a |
| Variant 5 | TT/GG | 11 | 0.01 | 8.38 | 7.82 | 1.08 | 5.73 | 9.24 | c |
| RIPENING PERIOD | |||||||||
| Variant 1 | GG/CC/CC/AA | 397 | 0.35 | 6.75 | 6.80 | 1.43 | 2.21 | 9.84 | a |
| Variant 2 | GG/CC/CC/AG | 336 | 0.29 | 5.69 | 5.63 | 1.35 | 0.88 | 9.50 | b |
| Variant 3 | GG/CC/CC/GG | 73 | 0.06 | 4.72 | 4.81 | 1.61 | 1.21 | 8.48 | c |
| Variant 4 | GG/CC/CT/AG | 61 | 0.05 | 3.75 | 3.74 | 1.73 | 0.88 | 8.77 | d |
| Variant 5 | AG/CT/CT/AG | 59 | 0.05 | 3.75 | 3.85 | 1.35 | 1.21 | 7.15 | d |
| Variant 6 | AG/CT/CT/GG | 44 | 0.04 | 2.89 | 2.54 | 1.32 | 0.54 | 6.85 | d |
| Variant 7 | GG/CC/CT/GG | 39 | 0.03 | 3.49 | 3.21 | 1.61 | 0.55 | 6.66 | d |
| Variant 8 | AG/CC/CT/AA | 29 | 0.03 | 7.44 | 7.67 | 1.51 | 4.82 | 9.80 | a |
| Variant 9 | AG/CT/TT/GG | 28 | 0.02 | 2.01 | 2.09 | 0.62 | 1.16 | 4.14 | e |
| Variant 10 | AA/TT/TT/GG | 23 | 0.02 | 2.11 | 2.21 | 1.10 | 0.54 | 4.42 | e |
a
The allele associated with an early flowering period is highlighted in bold; order of SNPs is as follows: SNP.9-1/SNP.9-2.
b
The allele associated with an early ripening period is highlighted in bold; order of SNPs is as follows: SNP.3-3/SNP.3-4/SNP.3-6/SNP.3-7.