TABLE 2 .
Number of variants among the household isolates and their classificationa
| Household | No. of isolates in household |
Total no. of variants (NC_017518.1) |
No. of variants by typeb: |
||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| I | U | D | S | In | De | M | F | Stop | |||
| NZ96/294 | 3 | 23 | 6 | 6 | 5 | 2 | 0 | 0 | 2 | 2 | 0 |
| NZ97/019 | 2 | 210 | 28 | 20 | 19 | 99 | 0 | 2 | 37 | 5 | 0 |
| NZ97/021 | 2 | 9 | 2 | 2 | 1 | 1 | 1 | 0 | 1 | 1 | 0 |
| NZ97/133 | 5 | 51 | 20 | 4 | 4 | 6 | 2 | 2 | 5 | 8 | 0 |
| NZ97/192 | 4 | 176 | 78 | 9 | 3 | 27 | 3 | 4 | 35 | 16 | 1 |
| NZ98/058 | 2 | 97 | 37 | 1 | 9 | 17 | 3 | 1 | 21 | 7 | 1 |
| NZ98/074 | 2 | 44 | 8 | 2 | 0 | 12 | 0 | 0 | 13 | 9 | 0 |
a
The single nucleotide polymorphisms detected are listed, including information about the household group where they were identified, number of isolates in each household, and summary of the type of polymorphism. The divergent isolate NZCM148 has been omitted.
b
Abbreviations: I, intergenic; U, upstream; D, downstream; S, synonymous; In, in-frame insertions; De, in-frame deletions; M, missense; F, frameshift; Stop, gained stop codon.