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. 2017 Nov 14;2(6):e00127-17. doi: 10.1128/mSystems.00127-17

TABLE 3 .

Homopolymeric and small-repeat variants upstream and within annotated transcripts

Position Reference
sequence		 Alternative
sequence(s)		 Location/effect Locus Changee
30823a G(A)11C G(A)10C; G(A)12C Upstream NMBNZ0533_0037
45680b C(G)9C C(G)10C Frameshift NMBNZ0533_0050
75462a C(T)9G C(T)10G Frameshift siaD Lys142fs
75798a T(G)7T T(G)6T Frameshift siaD Thr30fs
75872a C(T)7A C(T)6A Frameshift siaD Ile5fs
338414a A(G)9C A(G)10C Frameshift NMBNZ0533_0325 Pro958fs
354493 CAG(10) CGAGA(G)7A Upstream fetA
388239a C(G)9C C(G)10C;
C(G)11C		 Frameshift NMBNZ0533_0355 Pro96fs
424181a C(G)8A C(G)9A; C(G)7A Frameshift lgtA Glu88fs
506007 G(C)12G G(C)11G Frameshift NMBNZ0533_0475
515698 C(G)11A C(G)10A; C(G)12A;
C(G)13A		 Frameshift NMBNZ0533_0485 Glu63fs
546125 C(G)9A C(G)11A Frameshift NMBNZ0533_0508 Pro164fs
862493c A(G)8C A(G)7C Upstream purC
931392 C(G)9A C(G)10A; C(G)11A Frameshift NMBNZ0533_0877 Ter193fs
1119938d C(G)11A C(G)7A; C(G)10A;
C(G)8A		 Upstream opcA
1257866 C(G)9A C(G)8A; C(G)7A;
C(G)10A		 Frameshift NMBNZ0533_1221 Gly105fs; Phe106fs
1472851a G(T)7G G(T)8G Frameshift msbB Lys143fs
1487249c A(C)12G A(C)11G; A(C)10G Upstream porA
1529640 G(GAAGA)8G G(GAAGA)7G; G(GAAGA)9G;
G(GAAGA)10G		 Upstream NMBNZ0533_1444
1598967 C(TGCT)7T C(TGCT)5T Frameshift NMBNZ0533_1501 Glu4fs
1669031c C(G)8T C(G)9T Frameshift NMBNZ0533_1559 Val49fs
1721245 C(CTTCT)4C C(CTTCT)7C;
C(CTTCT)9C		 Upstream NMBNZ0533_1610
1963892 C(A)5C C(A)6C; (A)6C Upstream NMBNZ0533_1807
1997634 A(C)7G A(C)8G; A(C)9G;
A(C)11G		 Frameshift NMBNZ0533_1834 Gly141fs
a

Confirmed by Sanger sequencing within the NZ97/192 household isolates.

b

Multiple PCR products.

c

Mixed sequences detected by Sanger sequencing within the NZ97/192 household isolates.

d

Not confirmed by Sanger sequencing within the NZ97/192 household isolates.

e

fs, frameshift.