FIG 7.

T-RECs analysis of genetic exchange in IR1 regions of sLCL-IS2.01 and TRL1. The consensus sequences for sLCL-IS2.01 (A) and TRL1 (C) were modified to instead contain all of the minor variant bases (B and D). These sequences were compared to those of a set of four viruses (see the key to the right of the plots) from different clades on the phylogenetic tree to identify regions of similarity, using T-RECs. The similarity plots show the percent identity of the test strain to each comparator strain within a 200-bp scanning window.