TABLE 1.
Deletions overlapping the flanks of IR1
| Strain | Position of deletion (nearest EBV genome feature)a |
|||
|---|---|---|---|---|
| Upstream (BamC) |
Downstream (BamY) |
|||
| Upstream | IR1 | IR1 | Downstream | |
| X50-7 | 9479 (in oriP rep* region) | 14428 (after exon W0) | ||
| L591 | 11632 (in exon C2) | 12193 (50 bp before hairpin) | ||
| Cheptages | 7777 (in oriP FR) | 14669 (in W1-W2 intron) | 33604 (between W2 and hairpin) | 38301b (within IR2) |
| Daudi | 33127 (W1-W2 intron) | 40536 (oriLyt upstream element) | ||
| P3HR1 | 33351 (after exon W2) | 40157 (nr BHLF1 start) | ||
a
Positions in the prototype sequence NC_007605 that are equivalent to the first and last bases of the deletion are given.
b
First position within the repeat; the sequence recurs every 125 bp, so the precise location of the junction is uncertain.