Table 1.
Information on the candidate genes and TSP sites
| Orthologous A. th gene | Orthologous C. ru gene | Positions in A. th | Positions in C. ru | SNP annotation | CpG statusa | A1 | A2 | A2 frequency (A. th) | A2 frequency (C. ru) |
|---|---|---|---|---|---|---|---|---|---|
| AT1G35220 | Carubv10011082m | Chr 1: 12913634 | Scaffold 1: 12353061 | Intron | No: TGC-TTC | G | T | 46/81 | 5/23 |
| Chr 1: 12913648 | Scaffold 1: 12353075 | Intron | No: GAA-GGA | A | G | 46/81 | 5/23 | ||
| AT2G16570 | Carubv10015505m | Chr 2: 7180661 | Scaffold 3: 12816152 | S | No: ACA-ATA | C | T | 65/81 | 6/23 |
| Chr 2: 7180598 | Scaffold 3: 12816089 | S | Yes: TTG-TCG | T | C | 66/81 | 6/23 | ||
| AT4G29360 | Carubv10007158m | Chr 4: 14452628 | Scaffold 7: 4284494 | S | Yes: CGG-CCG | C | G | 5/81 | 13/23 |
| Chr 4: 14452661 | Scaffold 7: 4284527 | S | Yes: CGG-CAG | A | G | 5/81 | 13/23 | ||
| AT5G38460 | Carubv10004565m | Chr 5: 15399653 | Scaffold 7: 17116466 | M | No: TTC-TGC | T | G | 8/81 | 17/23 |
| Chr 5: 15399591 | Scaffold 7: 17116528 | S | No: TGC-TAC | G | A | 7/81 | 14/23 | ||
| AT5G44000 | Carubv10026474m | Chr 5: 17702574 | Scaffold 8: 1942064 | S | No: TTA-TCA | T | C | 75/81 | 4/23 |
| Chr 5: 17702547 | Scaffold 8: 1942091 | S | No: AGT-AAT | G | A | 75/81 | 4/23 |
aTrinucleotides centered on the TSP sites are listed