Table 2.
Genetic features of TSP sites
| Orthologous gene (A. th) | Site label | Position in A. th | r 2 (A. th/C. ru) | πa (A. th/C. ru) | MAF (A. th/C. ru) |
|---|---|---|---|---|---|
| AT1G35220 | TSP-1 | Chr 1: 12913634 | 1/1 | 0.036 (<2.2E-16)/0.037(<2.2E-16) | 0.432/0.217 |
| TSP-2 | Chr 1: 12913648 | 0.432/0.217 | |||
| AT2G16570 | TSP-3 | Chr 2: 7180661 | 0.92/1 | 0.017 (2.9E-9)/0.019 (5.9E-10) | 0.198/0.261 |
| TSP-4 | Chr 2: 7180598 | 0.185/0.261 | |||
| AT4G29360 | TSP-5 | Chr 4: 14452628 | 1/1 | 0.009 (1.8E-4)/0.034 (<2.2E-16) | 0.062/0.434 |
| TSP-6 | Chr 4: 14452661 | 0.062/0.434 | |||
| AT5G38460 | TSP-7 | Chr 5: 15399653 | 0.55/0.86 | 0.007 (0.34)/0.031 (6.4E-3) | 0.099/0.261 |
| TSP-8 | Chr 5: 15399591 | 0.086/0.391 | |||
| AT5G44000 | TSP-9 | Chr 5: 17702574 | 1/1 | 0.010 (1.4E-10)/0.023 (<2.2E-16) | 0.074/0.174 |
| TSP-10 | Chr 5: 17702547 | 0.074/0.174 |
aValues are the averages of the corresponding values in all 100 bp windows covering the TSP sites in strong linkage disequilibrium that could yield an allelic tree, and their associated FDR-adjusted P values are listed in parentheses