Table 1.

Read information from Methyl-Seq.

Sequencing Metrics	BLOOD	HIPPOCAMPUS
Paired End Reads (PER)	40,514,128	39,852,125
Uniquely Mapped Paired End Reads (UMPER)	31,349,404	30,021,816
Mapping Efficiency (UMPER/PER)	77.4%	75.4%
Duplicate Reads (% of UMPER)	27.4%	18.2%
Deduplicated UMPER	22,631,126	24,699,490
Average Read Depth Coverage (X) (ARDC)	12.5	15.0
CpGs (N)	5,747,028	6,071,788
ARDC (X) of CpGs	10.5	13.0
CpGs with at least 10 reads (N)	1,689,017	1,943,698
ARDC (X) of CpGs with at least 10 reads	29.5	35.8
ON TARGET CpGs with at least 10 reads (N)	1,473,324	1,647,390
ON TARGET ARDC (X) of CpGs with at least 10 reads	30.3	37.8
ON TARGET (PER with 1 or more Base Pair overlap with Probe Target Regions) (UMPER)	19,293,523	21,559,486
% ON TARGET (of Deduplicated UMPER)	85.2%	87.3%
ON TARGET (Total Bases Mapped) Mb	143.0	149.0
ON TARGET Average Read Depth Coverage (X) (ARDC)	27.0	28.8