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. 2017 Nov 15;7:15610. doi: 10.1038/s41598-017-15820-9

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© The Author(s) 2017

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Schematic overview of metabolic pathways of P. agglomerans strain P5. The portrayed pathways were identified based on the genomic data, which show the strain carries genes consistent with the ability to solubilize phosphate compounds. The genome also includes a complete carbohydrate metabolic pathway involving glycolysis/gluconeogenesis, the tricarboxylic acid (TCA) cycle, pyruvate metabolism and the pentose phosphate pathway (PPP). The latter includes the genes responsible for gluconic acid synthesis from D-glucose, such as gcd and gdh and the related pathways. Similarly, the synthesis of other organic acids is shown in their specified pathway.