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(A) Domain model and (B) Example of phenotypes produced from the DeepPhe system. Bold and underlined items in 1b show the mentions extracted by cTAKES pipeline 1 (mention detection). Abbreviations/Acronyms: cTAKES - Apache Clinical Text Analysis and Knowledge Extraction System; FHIR – Fast Healthcare Interoperability Resources; RAD – radiology note; SP – surgical pathology note
