TABLE 3.

Differences in the relative abundances of significant OTUs between controls and vaccinated broilers

OTU	Organism(s)	% identity	Fold change in relative abundance for group					P value
			PBS	Cj	Ec	EcLr	EcAm
OTU_11	Campylobacter jejuni subsp. jejuni-Campylobacter subantarcticus	100	0.2144	3.6170	1.1009	0.7357	2.2292	0.0075
OTU_13	Proteus mirabilis	100	0.0006	0.0943	4.0737	4.9539	0.6917	<0.0001
OTU_15	Enterococcus casseliflavus-Enterococcus faecium-Enterococcus gallinarum-Enterococcus dispar-Enterococcus canintestini	100	2.4172	0.9982	1.3140	1.4133	1.3226	0.0389
OTU_16	Enterococcus cecorum	100	4.6469	2.8268	1.7185	1.8745	1.1014	0.0008
OTU_20	Ruminococcus sp.-Blautia sp.	98.7	0.1562	0.5381	0.2919	0.7508	0.5464	0.0157
OTU_21	Clostridium paraputrificum	100	0.5622	0.5025	0.0524	0.3606	0.0548	0.0410
OTU_24	Weissella paramesenteroides	100	0.6453	0.1761	0.3811	0.2347	0.0584	0.0304
OTU_33	Escherichia coli-Shigella dysenteriae	99.57	2.8263	1.8572	1.9689	2.1361	3.8945	0.0311
OTU_34	Corynebacterium variabile	100	0.0409	0.0658	0.0259	0.0124	0.0071	0.0147
OTU_37	Corynebacterium sp.	100	0.0138	0.0175	0.0092	0.0125	0.0039	0.0258
OTU_4	Blautia hydrogenotrophica-Ruminococcus hydrogenotrophicus	94.64	4.9235	11.6432	11.5208	20.9710	16.1344	0.0064
OTU_47	Achromobacter spanius-Achromobacter xylosoxidans-Achromobacter piechaudii-Achromobacter marplatensis-Alcaligenes faecalis-Collimonas sp.	100	0.0000	0.0003	0.0013	0.0011	0.0003	0.0462
OTU_56	Clostridium clostridioforme	95.71	0.0006	0.0008	0.0000	0.0008	0.0020	0.0139
OTU_57	Sanguibacter inulinus	100	0.0040	0.0002	0.0002	0.0003	0.0000	0.0012
OTU_59	Pseudomonas geniculata-Stenotrophomonas maltophilia-Xanthomonas sp.-Pectobacterium carotovorum subsp. carotovorum	100	0.0017	0.0042	0.0060	0.0003	0.0000	0.0076
OTU_61	Brevibacterium stationis-Corynebacterium sp.	100	0.0000	0.0000	0.0003	0.0022	0.0000	0.0268
OTU_7	Weissella cibaria-Weissella confusa	100	8.5346	3.5279	3.2851	2.8729	3.2314	0.0411
OTU_80	Clostridium aldenense	98.07	0.7110	0.6345	3.1051	4.0495	4.3984	0.0040