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. Author manuscript; available in PMC: 2018 Nov 24.
Published in final edited form as: J Mol Biol. 2017 Oct 5;429(23):3587–3605. doi: 10.1016/j.jmb.2017.09.017

Figure 5. Results of the MC/SA simulation on a fragment of ribosomal RNA (PDB ID: 1DK1).

Figure 5

The initial graph constructed after junction family and stacking prediction is subjected to MC/SA simulation. The graph shows convergence of the MC/SA simulations. The two potential candidate graphs are shown, along with their graph RMSDs from the 3D tree graph of the reference crystal structure.