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. Author manuscript; available in PMC: 2018 Nov 24.
Published in final edited form as: J Mol Biol. 2017 Oct 5;429(23):3587–3605. doi: 10.1016/j.jmb.2017.09.017

Figure 6. RAG-3D partitioning for 7S.S SRP RNA (PDB ID: 1LNG).

Figure 6

Subgraphs and best matching (lowest graph RMSD) atomic fragments for the candidate graph of the signal recognition particle (PDB ID: 1LNG) are shown as obtained by our RAG-3D graph partitioning and search (with added requirement for the fragment to have matching loop types).